ch.specchio.metadata

Class MetaDataFromTabModel

java.lang.Object

ch.specchio.metadata.MetaDataFromTabModel

public class MetaDataFromTabModel
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
MetaDataFromTabModel()

Method Summary

Modifier and Type	Method and Description
java.util.ArrayList<attribute>	getAttribute_of_columns()
java.lang.String	getAttributeNameOfColumn(int col)
attribute	getAttributeOfColumn(int col)
java.util.Hashtable<java.lang.String,Category>	getCategories_hash()
java.util.ArrayList<Category>	getCategories_of_columns()
Category	getCategoryOfColumn(int col)
java.util.Hashtable<java.lang.String,java.lang.String>	getColumn_element_matching_LUT()
java.util.ArrayList<java.lang.Integer>	getColumnNumbersOfAssignedColumns()
jxl.Sheet	getCurrentSheet()
java.lang.String	getElement_column_matching_file()
java.lang.String	getItem_name_of_column(int col)
java.util.ArrayList<java.lang.String>	getItem_name_of_columns()
java.util.ArrayList<java.lang.String>	getListOfTableColumnNames()
java.util.ArrayList<java.lang.Object>	getMatchedTableValues()
MatlabAdaptedArrayList<java.lang.Object>	getMatching_col_db_values()
int	getMatching_col()
java.lang.String	getMatching_problems()
java.util.Hashtable<java.lang.Integer,java.lang.Integer>	getMatchingLUT()
int	getNumber_of_matches()
int	getNumber_of_missing_matches()
int	getNumberOfAssignableColumns()
int	getNumberOfAssignedColumns()
int	getNumberOfSpectra()
java.util.ArrayList<Category>	getPossible_categories()
java.lang.String	getRegex_end()
java.lang.String	getRegex_start()
java.lang.String	getRegexExample()
java.lang.String	getRegexForClass(java.lang.Class<?> cl, java.lang.Object value)
java.util.ArrayList<java.lang.Integer>	getSpectrum_ids()
java.util.ArrayList<java.lang.Object>	getValuesOfTableColumn(int col)
jxl.Workbook	getWorkbook()
boolean	matchingColumnIsSet()
void	matchingColumnIsSet(boolean b)
boolean	regexIsSet()
void	reset()
void	setAttribute_of_columns(java.util.ArrayList<attribute> attribute_of_columns)
void	setAttributeOfColumn(int col, java.lang.Integer id, java.lang.String item_name)
void	setCategories_hash(java.util.Hashtable<java.lang.String,Category> categories_hash)
void	setCategories_of_columns(java.util.ArrayList<Category> categories_of_columns)
void	setCategoryOfColumn(Category cat, int col)
void	setColumn_element_matching_LUT(java.util.Hashtable<java.lang.String,java.lang.String> column_element_matching_LUT)
void	setElement_column_matching_file(java.lang.String element_column_matching_file)
void	setItem_name_of_columns(java.util.ArrayList<java.lang.String> item_name_of_columns)
void	setMatchedTableValues(java.util.ArrayList<java.lang.Object> matched_table_values)
void	setMatching_col_db_values(MatlabAdaptedArrayList<java.lang.Object> matching_col_db_values)
void	setMatching_problems(java.lang.String matching_problems)
void	setMatchingColumn(int col)
void	setMatchingLUT(java.util.Hashtable<java.lang.Integer,java.lang.Integer> spectrum_to_table_val_matches)
void	setMatchingTable(java.io.File file)
void	setNumber_of_matches(int number_of_matches)
void	setNumber_of_missing_matches(int number_of_missing_matches)
void	setPossible_categories(java.util.ArrayList<Category> possible_categories)
void	setRegex_end(java.lang.String regex_end)
void	setRegex_start(java.lang.String regex_start)
void	setSpectrumIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)
void	setWorkbook(jxl.Workbook w)
boolean	validAttribute(int col)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MetaDataFromTabModel

public MetaDataFromTabModel()

Method Detail

getSpectrum_ids

public java.util.ArrayList<java.lang.Integer> getSpectrum_ids()

getCategories_of_columns

public java.util.ArrayList<Category> getCategories_of_columns()

setCategories_of_columns

public void setCategories_of_columns(java.util.ArrayList<Category> categories_of_columns)

getPossible_categories

public java.util.ArrayList<Category> getPossible_categories()

setPossible_categories

public void setPossible_categories(java.util.ArrayList<Category> possible_categories)

setCategoryOfColumn

public void setCategoryOfColumn(Category cat,
                                int col)

getCategoryOfColumn

public Category getCategoryOfColumn(int col)

getMatching_col

public int getMatching_col()

setWorkbook

public void setWorkbook(jxl.Workbook w)

getWorkbook

public jxl.Workbook getWorkbook()

getCurrentSheet

public jxl.Sheet getCurrentSheet()

setMatchingColumn

public void setMatchingColumn(int col)

setSpectrumIds

public void setSpectrumIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)

matchingColumnIsSet

public void matchingColumnIsSet(boolean b)

matchingColumnIsSet

public boolean matchingColumnIsSet()

getAttributeNameOfColumn

public java.lang.String getAttributeNameOfColumn(int col)

getAttributeOfColumn

public attribute getAttributeOfColumn(int col)

getItem_name_of_column

public java.lang.String getItem_name_of_column(int col)

setAttributeOfColumn

public void setAttributeOfColumn(int col,
                                 java.lang.Integer id,
                                 java.lang.String item_name)

getItem_name_of_columns

public java.util.ArrayList<java.lang.String> getItem_name_of_columns()

setItem_name_of_columns

public void setItem_name_of_columns(java.util.ArrayList<java.lang.String> item_name_of_columns)

getAttribute_of_columns

public java.util.ArrayList<attribute> getAttribute_of_columns()

setAttribute_of_columns

public void setAttribute_of_columns(java.util.ArrayList<attribute> attribute_of_columns)

getMatching_col_db_values

public MatlabAdaptedArrayList<java.lang.Object> getMatching_col_db_values()

setMatching_col_db_values

public void setMatching_col_db_values(MatlabAdaptedArrayList<java.lang.Object> matching_col_db_values)

getValuesOfTableColumn

public java.util.ArrayList<java.lang.Object> getValuesOfTableColumn(int col)

setMatchingLUT

public void setMatchingLUT(java.util.Hashtable<java.lang.Integer,java.lang.Integer> spectrum_to_table_val_matches)

getMatchingLUT

public java.util.Hashtable<java.lang.Integer,java.lang.Integer> getMatchingLUT()

setMatchedTableValues

public void setMatchedTableValues(java.util.ArrayList<java.lang.Object> matched_table_values)

getMatchedTableValues

public java.util.ArrayList<java.lang.Object> getMatchedTableValues()

validAttribute

public boolean validAttribute(int col)

reset

public void reset()

getNumber_of_matches

public int getNumber_of_matches()

setNumber_of_matches

public void setNumber_of_matches(int number_of_matches)

getNumber_of_missing_matches

public int getNumber_of_missing_matches()

setNumber_of_missing_matches

public void setNumber_of_missing_matches(int number_of_missing_matches)

getNumberOfSpectra

public int getNumberOfSpectra()

getNumberOfAssignedColumns

public int getNumberOfAssignedColumns()

getNumberOfAssignableColumns

public int getNumberOfAssignableColumns()

getColumnNumbersOfAssignedColumns

public java.util.ArrayList<java.lang.Integer> getColumnNumbersOfAssignedColumns()

regexIsSet

public boolean regexIsSet()

getRegex_start

public java.lang.String getRegex_start()

setRegex_start

public void setRegex_start(java.lang.String regex_start)

getRegex_end

public java.lang.String getRegex_end()

setRegex_end

public void setRegex_end(java.lang.String regex_end)

getRegexExample

public java.lang.String getRegexExample()

getRegexForClass

public java.lang.String getRegexForClass(java.lang.Class<?> cl,
                                         java.lang.Object value)

setMatchingTable

public void setMatchingTable(java.io.File file)

getElement_column_matching_file

public java.lang.String getElement_column_matching_file()

setElement_column_matching_file

public void setElement_column_matching_file(java.lang.String element_column_matching_file)

getListOfTableColumnNames

public java.util.ArrayList<java.lang.String> getListOfTableColumnNames()

getColumn_element_matching_LUT

public java.util.Hashtable<java.lang.String,java.lang.String> getColumn_element_matching_LUT()

setColumn_element_matching_LUT

public void setColumn_element_matching_LUT(java.util.Hashtable<java.lang.String,java.lang.String> column_element_matching_LUT)

getCategories_hash

public java.util.Hashtable<java.lang.String,Category> getCategories_hash()

setCategories_hash

public void setCategories_hash(java.util.Hashtable<java.lang.String,Category> categories_hash)

getMatching_problems

public java.lang.String getMatching_problems()

setMatching_problems

public void setMatching_problems(java.lang.String matching_problems)