SPECCHIOWebClient (SPECCHIO 3.3.0 API)

java.lang.Object
- ch.specchio.client.SPECCHIOWebClient

All Implemented Interfaces:: SPECCHIOClient

public class SPECCHIOWebClient
extends java.lang.Object
implements SPECCHIOClient

SPECCHIO web client.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`calculateSunAngle(java.util.ArrayList<java.lang.Integer> spectrumIds, SPECCHIOClient client)` Get metaparameters for spectrum ids and EAV attribute
`void`	`clearMetaparameterRedundancyList()` Clears the known metaparameter list held by the server for this user
`void`	`close()` Close this client
`void`	`connect()` Connect to the SPECCHIO web application.
`int`	`copyHierarchy(int hierarchy_id, int target_hierarchy_id, java.lang.String new_name)` Copy a hierarchy to a specified hierarchy with a new name.
`java.util.ArrayList<java.lang.Integer>`	`copySpectra(java.util.ArrayList<java.lang.Integer> spectrum_id, int target_hierarchy_id, int current_hierarchy_id)` Copy a spectrum to a specified hierarchy.
`int`	`copySpectrum(int spectrum_id, int target_hierarchy_id)` Copy a spectrum to a specified hierarchy.
`void`	`createFilterCollection(java.util.ArrayList<java.lang.Integer> spectrumIds, java.util.ArrayList<java.lang.Integer> attributeIds)`
`void`	`createInstrument(java.lang.String name)` Create a new instrument.
`void`	`createReference(java.lang.String name)` Create a new reference.
`User`	`createUserAccount(User user)` Create a user account.
`User`	`createUserAccountOnCurrentServer(User user)` Create a user account on this specchio server.
`void`	`dbUpgrade(double version, java.io.FileInputStream fis)` Database upgrade
`void`	`deleteCalibration(int calibration_id)` Delete calibration data from the database
`void`	`deleteInstrument(int instrument_id)` Delete an instrument from the database.
`void`	`deleteInstrumentPicture(int picture_id)` Delete a picture of an instrument from the database.
`void`	`deleteReference(int reference_id)` Delete a reference from the database.
`void`	`deleteReferencePicture(int picture_id)` Delete a picture of a reference from the database.
`int`	`deleteTargetReferenceLinks(int eav_id)` Delete a target-reference link from the database.
`void`	`disconnect()` Disconnect from the SPECCHIO web application.
`java.util.ArrayList<java.lang.Integer>`	`filterSpectrumIdsByHavingAttribute(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.lang.String attribute_name)` Get the spectrum identifiers that do have a reference to the specified attribute.
`java.util.ArrayList<java.lang.Integer>`	`filterSpectrumIdsByHavingAttributeValue(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.lang.String attribute_name, java.lang.Object value)` Get the spectrum identifiers that do reference to the specified attribute of a specified value.
`java.util.ArrayList<java.lang.Integer>`	`filterSpectrumIdsByNotHavingAttribute(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.lang.String attribute_name)` Get the spectrum identifiers that do not have a reference to the specified attribute.
`java.util.ArrayList<java.lang.Integer>`	`findMatchingSpectra(java.util.ArrayList<java.lang.Integer> spectrumIds, java.util.ArrayList<QueryAttribute> queryAttributes)`
`AdjacencyMatrix`	`getAdjacencyMatrix(int uncertainty_set_id)` Get the adjacency matrix for an uncertainty set
`attribute[]`	`getAttributes()` Get the attributes object containing information on all attributes, units and categories.
`attribute[]`	`getAttributesForCategory(java.lang.String category)` Get the attributes for a metadata category.
`java.util.Hashtable<java.lang.Integer,attribute>`	`getAttributesIdHash()` Get the attributes hashtable
`java.util.Hashtable<java.lang.String,attribute>`	`getAttributesNameHash()` Get the attributes hashtable
`Units`	`getAttributeUnits(attribute attr)` Get the units for an attribute.
`Instrument`	`getCalibratedInstrument(int calibration_id)` Get a calibrated instrument.
`java.util.ArrayList<java.lang.Integer>`	`getCalibrationIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Get calibration ids for a list of spectra.
`CalibrationMetadata[]`	`getCalibrationMetadataByCalibrationNumber(int instrument_id, int calibration_number)` Get an array of CalibrationMetadata based on an instrument id and a calibration number (typically an ASD instrument).
`Campaign`	`getCampaign(int campaign_id)` Get a campaign descriptor.
`java.io.InputStream`	`getCampaignExportInputStream(Campaign c)` Export a campaign.
`campaign_node`	`getCampaignNode(int campaign_id, java.lang.String order_by, boolean restrict_to_view)` Get a campaign node for the spectral data browser.
`Campaign[]`	`getCampaigns()` Get all of the campaigns in the database.
`Campaign[]`	`getCampaigns(boolean load_metadata_details)` Get all of the campaigns in the database.
`java.lang.String`	`getCapability(java.lang.String capability)` Get the value of a capability.
`java.util.ArrayList<Category>`	`getCategoriesInfo()` Get the info of all EAV metadata categories.
`java.util.List<spectral_node_object>`	`getChildrenOfNode(spectral_node_object sn)` Get the children of a node of the spectral data browser.
`java.util.List<TaxonomyNodeObject>`	`getChildrenOfTaxonomyNode(TaxonomyNodeObject tn)` Get the children of a node of a taxonomy.
`Country[]`	`getCountries()` Get the list of countries known to the server.
`database_node`	`getDatabaseNode(java.lang.String order_by, boolean restrict_to_view)` Get a database node for the spectral data browser.
`java.lang.Integer`	`getDirectHierarchyId(int spectrum_id)` Get the direct hierarchy id of a single spectrum
`java.util.ArrayList<java.lang.Integer>`	`getDirectHierarchyIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Get hierarchy ids, directly above these spectra
`java.util.ArrayList<java.lang.Integer>`	`getDirectSpectrumIdsOfHierarchy(int hierarchy_id)` Get the identifiers of all spectra directly belonging to a hierarchy
`java.util.ArrayList<MetaParameter>`	`getDistinctValuesOfAttribute(int attribute_id)` Get distinct values of an attribute
`ConflictTable`	`getEavMetadataConflicts(int metadata_level, java.util.ArrayList<java.lang.Integer> ids)` Get a conflicts in the EAV metadata for a set of spectra.
`EAVQueryConditionObject`	`getEAVQueryConditionObject(attribute attr)` Return an EAVQueryConditionObject configured for the supplied attribute.
`java.lang.String`	`getEdgeValue(int edge_id)` Get edge value for a given edge_id
`java.lang.Integer`	`getExistingMetaparameterCount(java.lang.Integer attribute_id, java.util.ArrayList<java.lang.Integer> ids)` Get the count of existing metaparameters for the supplied spectrum ids and attribute id
`int`	`getFileFormatId(java.lang.String format)` Get the file format identifier for a file format name.
`Hierarchy`	`getHierarchy(java.lang.Integer hierarchy_id)` Get the hierarchy object for a given hierarchy_id
`java.lang.String`	`getHierarchyFilePath(int hierarchy_id)` Get the file path of a hierarchy.
`int`	`getHierarchyId(Campaign campaign, java.lang.String name, int parent_id)` Get the identifier of a hierarchy node.
`java.util.ArrayList<java.lang.Integer>`	`getHierarchyIdsOfSpectra(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Get a list of hierarchy ids, covering all hierarchies above these spectra
`java.lang.String`	`getHierarchyName(int hierarchy_id)` Get the name of a hierarchy.
`int`	`getHierarchyParentId(int hierarchy_id)` Get the parent_id for a given hierarchy_id
`Institute[]`	`getInstitutes()` Get all of the institutes in the database.
`Instrument`	`getInstrument(Instrument instrument)` Get an instrument that matches the passed object or creates a new instrument and returns it
`Instrument`	`getInstrument(int instrument_id)` Get an instrument.
`CalibrationMetadata[]`	`getInstrumentCalibrationMetadata(int instrument_id)` Get the calibration metadata for an instrument.
`InstrumentDescriptor[]`	`getInstrumentDescriptors()` Get descriptors for all of the instruments in the database.
`Instrument`	`getInstrumentForSpectralFile(SpectralFile spec_file)` Get a instrument object for a given spectral file object.
`java.util.ArrayList<java.lang.Integer>`	`getInstrumentIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Get instrument ids for a list of spectra.
`PictureTable`	`getInstrumentPictures(int instrument_id)` Get all of the pictures for an instrument.
`java.util.ArrayList<java.lang.Integer>`	`getIrradiance(java.lang.String campaignId)` Get the identifiers of all spectra that match a full text search.
`User`	`getLoggedInUser()` Get a user object representing the user under which the client is logged in.
`MeasurementUnit`	`getMeasurementUnitFromCoding(int coding)` Get measurement unit for ASD based coding.
`java.util.ArrayList<java.lang.Integer>`	`getMetadataCategoriesForApplicationDomain(int taxonomy_id)` Get the metadata categories for application domain
`ApplicationDomainCategories[]`	`getMetadataCategoriesForApplicationDomains()` Get the metadata categories per application domain
`CategoryTable`	`getMetadataCategoriesForIdAccess(java.lang.String field)` Get the metadata categories for a metadata field.
`java.util.Hashtable<java.lang.String,java.lang.Integer>`	`getMetadataCategoriesForNameAccess(java.lang.String field)` Get the metadata categories for a metadata field, ready for access via name
`ConflictTable`	`getMetadataConflicts(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.lang.String[] fields)` Get the metadata conflicts for a set of spectra and set of fields.
`MetaParameter`	`getMetaparameter(java.lang.Integer id, java.lang.String attribute_name)` Get metaparameter for spectrum id and EAV attribute
`java.util.ArrayList<java.util.ArrayList<MetaParameter>>`	`getMetaparameters(java.util.ArrayList<java.lang.Integer> ids, java.util.ArrayList<java.lang.Integer> attribute_ids)` Get list of metaparameters for spectrum ids and EAV attributes
`java.util.ArrayList<MetaParameter>`	`getMetaparameters(java.util.ArrayList<java.lang.Integer> ids, java.lang.String attribute_name)` Get metaparameters for spectrum ids and EAV attribute
`java.util.ArrayList<MetaParameter>`	`getMetaparameters(java.util.ArrayList<java.lang.Integer> ids, java.lang.String attribute_name, java.lang.Boolean distinct)` Get metaparameters for spectrum ids and EAV attribute
`MetaparameterStatistics`	`getMetaparameterStatistics(java.util.ArrayList<java.lang.Integer> ids, java.lang.String attribute_name)` Get metaparameter value statistics for spectrum ids and EAV attribute
`MatlabAdaptedArrayList<java.lang.Object>`	`getMetaparameterValues(java.util.ArrayList<java.lang.Integer> ids, java.lang.String attribute_name)` Get values for spectrum ids and EAV attribute (non-distinct values by default)
`MatlabAdaptedArrayList<java.lang.Object>`	`getMetaparameterValues(java.util.ArrayList<java.lang.Integer> ids, java.lang.String attribute_name, java.lang.Boolean distinct)` Get values for spectrum ids and EAV attribute
`java.util.ArrayList<java.lang.Integer>`	`getNewestSpectra(int number_of_spectra)` Get newest N spectra.
`java.util.ArrayList<attribute>`	`getNonNullAttributes(java.util.ArrayList<java.lang.Integer> spectrumIds)`
`java.util.ArrayList<Category>`	`getNonNullCategories(java.util.ArrayList<java.lang.Integer> spectrumIds)` Get the ids and names of all metadata categories used by a set of given spectra.
`java.lang.String[]`	`getPoliciesForSpace(Space space)` Get the data usage policies for a space.
`Query`	`getQueryObject()` Get an empty query object
`Reference`	`getReference(int reference_id)` Get a reference.
`ReferenceBrand[]`	`getReferenceBrands()` Get all of the reference brands in the database.
`CalibrationMetadata[]`	`getReferenceCalibrationMetadata(int reference_id)` Get the calibration metadata for a reference.
`ReferenceDescriptor[]`	`getReferenceDescriptors()` Get descriptors for all of the references in the database.
`PictureTable`	`getReferencePictures(int reference_id)` Get all of the pictures associated with a reference.
`ReferenceSpaceStruct`	`getReferenceSpace(java.util.ArrayList<java.lang.Integer> input_ids)` Get a reference space.
`Sensor[]`	`getSensors()` Get all of the sensors in the database.
`GonioSamplingPoints`	`getSensorSamplingGeometry(SpectralSpace space)` Get sensor sampling geometry
`SPECCHIOServerDescriptor`	`getServerDescriptor()` Get a server descriptor that describes the server to which this client is connected.
`Space[]`	`getSpaces(java.util.ArrayList<java.lang.Integer> ids, boolean split_spaces_by_sensor, boolean split_spaces_by_sensor_and_unit, java.lang.String order_by)` Get the space objects for a set of spectrum identifiers.
`Space[]`	`getSpaces(java.util.ArrayList<java.lang.Integer> ids, java.lang.String order_by)` Get the space objects for a set of spectrum identifiers.
`Spectrum`	`getSpectrum(int spectrum_id, boolean load_metadata)` Get a spectrum.
`Space[]`	`getSpectrumCalibrationSpaces(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Get the calibration spaces for a set of spectra.
`int`	`getSpectrumCountInDB()` Get the number of spectra in the database
`SpectrumFactorTable`	`getSpectrumFactorTable(java.util.ArrayList<java.lang.Integer> spectrum_ids_1, java.util.ArrayList<java.lang.Integer> spectrum_ids_2)` Get the spectrum factor table for a set of spectra.
`java.util.List<java.lang.Integer>`	`getSpectrumIdsForNode(spectral_node_object sn)` Get the identifiers of all spectra beneath a given node of the spectral data browser
`java.util.ArrayList<java.lang.Integer>`	`getSpectrumIdsMatchingFullTextSearch(java.lang.String search_str)` Get the identifiers of all spectra that match a full text search.
`java.util.ArrayList<java.lang.Integer>`	`getSpectrumIdsMatchingFullTextSearchUsingHierarchy(java.lang.String search_str)` Get the identifiers of all spectra that match a full text search using metadata hierarchy.
`java.util.ArrayList<java.lang.Integer>`	`getSpectrumIdsMatchingQuery(Query query)` Get the spectrum identifiers that match a given query.
`PictureTable`	`getSpectrumPictures(int spectrum_id)` Get the pictures associated with a spectrum.
`int`	`getSpectrumQueryCount(Query query)` Get the number of spectra that matach a given query.
`int`	`getSubHierarchyId(Campaign campaign, java.lang.String name, int parent_id)` Get the identifier of a sub-hierarchy with a given name, creating the hierarchy if it doesn't exist (deprecated)
`int`	`getSubHierarchyId(java.lang.String name, int parent_id)` Get the identifier of a sub-hierarchy with a given name, creating the hierarchy if it doesn't exist.
`SpectrumDataLink[]`	`getTargetReferenceLinks(java.util.ArrayList<java.lang.Integer> target_ids, java.util.ArrayList<java.lang.Integer> reference_ids)` Get the spectrum data links that refer to a given set of targets and/or references.
`java.util.Hashtable<java.lang.String,java.lang.Integer>`	`getTaxonomyHash(attribute attribute)` Get the taxonomy hash for a given taxonomy
`java.util.Hashtable<java.lang.String,java.lang.Integer>`	`getTaxonomyHash(int attribute_id)` Get the taxonomy hash for a given taxonomy
`int`	`getTaxonomyId(int attribute_id, java.lang.String name)` Get the id for a given taxonomy node in a given taxonomy
`java.util.Hashtable<java.lang.Integer,java.lang.String>`	`getTaxonomyIdToNameHash(int attribute_id)` Get the ID to name hash for a given taxonomy
`TaxonomyNodeObject`	`getTaxonomyNode(int taxonomy_id)` Get the node for a given taxonomy
`TaxonomyNodeObject`	`getTaxonomyRootNode(int attribute_id)` Get the top node for a given taxonomy
`UncertaintyNode`	`getUncertaintyInstrumentNode(int instrument_node_id)` Get instrument node for a given instrument node id
`UncertaintyNode[]`	`getUncertaintyNodeComponents(int uncertainty_node_id)` Retrieve an uncertainty node.
`UncertaintyNode[]`	`getUncertaintyNodeSubSets(int uncertainty_node_id)` Retrieve uncertainty node subsets.
`UncertaintySet`	`getUncertaintySet(int uncertainty_set_id)` Get uncertainty set
`java.util.ArrayList<java.lang.Integer>`	`getUncertaintySetIds(int spectrum_id)` Get ids of uncertainty sets that contain a spectrum id
`java.util.ArrayList<UncertaintySetSpectraList>`	`getUncertaintySetSpectraLists(java.util.ArrayList<java.lang.Integer> spectrum_ids)` Retrieve uncertainty set ids where spectrum ids can be found
`Space[]`	`getUncertaintySpaces(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.util.ArrayList<java.lang.Integer> uncertainty_set_ids, java.lang.String order_by)` Get the uncertainty spaces for a set of spectra and uncertainty set ids.
`UncertaintyNode`	`getUncertaintySpectrumNode(int spectrum_node_id)` Get spectrum node for a given spectrum node id
`java.util.ArrayList<java.lang.Integer>`	`getUnprocessedHierarchies(java.lang.String campaignId)` Get the identifiers of all spectra that match a full text search.
`User[]`	`getUsers()` Get a list of all of the users in the database.
`User[]`	`getUsersWithStatistics()` Get a list of all of the users in the database with added user statistics (number of loaded spectra, number of campaigns).
`void`	`importCampaign(int user_id, java.io.InputStream is)` Import a campaign.
`void`	`importCampaign(int user_id, java.lang.String server_filepath)` Import a campaign from a file that is on the Glassfish server (used for bigger files to prevent timeouts)
`int`	`insertCampaign(Campaign campaign)` Insert a new campaign into the database
`int`	`insertClosestTargetReferenceLink(int target_id, java.util.ArrayList<java.lang.Integer> reference_ids)` Insert a target-reference link to closest reference on acquisition timeline
`int`	`insertHierarchy(Campaign campaign, java.lang.String name, int parent_id)` Insert a hierarchy node.
`int`	`insertInstitute(Institute institute)` Insert a new institute into the database
`void`	`insertInstrumentCalibration(Calibration c)` Insert calibration for an instrument.
`void`	`insertInstrumentPicture(Picture picture)` Insert a picture of an instrument into the database.
`int`	`insertNewUncertaintySet(UncertaintySet uc_set)` Insert new uncertainty set
`void`	`insertReferenceCalibration(Calibration c)` Insert calibration for a reference into the database.
`void`	`insertReferencePicture(Picture picture)` Insert a picture associated with a reference into the database.
`SpectralFileInsertResult`	`insertSpectralFile(SpectralFile spec_file)` Insert a spectral file into the database.
`int`	`insertSpectrumSubset(UncertaintySpectrumNode uc_spectrum_node)` Insert a spectrum subset
`int`	`insertTargetReferenceLinks(int target_id, java.util.ArrayList<java.lang.Integer> reference_ids)` Insert a target-reference link.
`int`	`insertUncertaintyInstrumentNode(UncertaintyInstrumentNode instrument_node)` Insert instrument node.
`int`	`insertUncertaintyNode(UncertaintyInstrumentNode instrument_node, int uc_set_id)` Insert instrument node.
`int`	`insertUncertaintyNode(UncertaintySpectrumNode uc_spectrum_node, int uc_set_id)` Insert an uncertainty node
`boolean`	`instrumentCalibrationExists(Calibration cal)` Test for the existence of a calibration in the database.
`boolean`	`isLoggedInWithRole(java.lang.String roleName)` Test whether or not the web client is logged in under a given role.
`MetaParameter`	`loadMetaparameter(int metaparameter_id)` Get the meta-parameter of the given metaparameter identifier.
`void`	`loadSensor(java.io.InputStream is)` Load a sensor definition into the database from an input stream.
`Space`	`loadSpace(Space space)` Load a Space object.
`boolean`	`moveHierarchy(int source_hierarchy_id, int target_parent_hierarchy)` Move a hierarchy to a new parent hierarchy within the same campaign.
`void`	`refreshMetadataCategory(java.lang.String field)` Causes the client to reload data values the specified category upon next request.
`void`	`removeEavMetadata(attribute attr, java.util.ArrayList<java.lang.Integer> spectrum_ids, int metadata_level)` Remove one or more items of EAV metadata for a collection of spectra for a defined attribute.
`void`	`removeEavMetadata(MetaParameter mp)` Remove an item of EAV metadata.
`void`	`removeEavMetadata(MetaParameter mp, java.util.ArrayList<java.lang.Integer> spectrum_ids)` Remove an item of EAV metadata for a collection of spectra.
`void`	`removeSpectralNode(spectral_node_object sn)` Remove the data corresponding to a node of the spectral data browser.
`void`	`removeSpectralNodes(java.util.ArrayList<spectral_node_object> sns)` Remove the data corresponding to a node of the spectral data browser.
`boolean`	`renameHierarchy(int hierarchy_id, java.lang.String name)` Rename a hierarchy in the database and also on the file system if the path is accessible.
`void`	`setProgressReport(ProgressReportInterface pr)` Set the progress report interface to which progress made by this client will be reported.
`AVMatchingListCollection`	`sortByAttributes(java.util.ArrayList<java.lang.Integer> spectrum_ids, java.lang.String... attribute_names)` Sort spectra by the values of the specified attributes
`boolean`	`spectralFileExists(SpectralFile spec_file)` Test for the existence of a spectral file in the database.
`boolean[]`	`spectralFilesExist(SpectralFiles spec_files)` Test for the existence of a spectral files in the database.
`java.lang.String`	`submitRDACollection(RDACollectionDescriptor collection_d)` Submit a collection to Research Data Australia.
`void`	`updateCampaign(Campaign campaign)` Update the information about a campaign
`int`	`updateEavMetadata(MetaParameter mp, java.util.ArrayList<java.lang.Integer> spectrum_ids)` Update EAV metadata.
`int`	`updateEavMetadata(MetaParameter mp, java.util.ArrayList<java.lang.Integer> spectrum_ids, MetaParameter mp_old)` Update EAV metadata.
`int`	`updateEavMetadataAnnotation(MetaParameter mp, java.util.ArrayList<java.lang.Integer> spectrum_ids)` Update EAV metadata annotation.
`void`	`updateInstrument(Instrument instrument)` Update an instrument.
`void`	`updateInstrumentCalibrationMetadata(CalibrationMetadata cm)` Update the calibration metadata for an instrument.
`void`	`updateInstrumentPicture(Picture picture)` Update a picture associated with an instrument.
`int`	`updateOrInsertEavMetadata(java.util.ArrayList<Metadata> md, java.util.ArrayList<java.lang.Integer> ids, int campaignId)` Update or insert EAV metadata.
`int`	`updateOrInsertEavMetadata(MetaParameter mp, java.util.ArrayList<java.lang.Integer> spectrum_ids)` Update or insert EAV metadata.
`int`	`updateOrInsertEavMetadata(MetaParameter mp, int spectrum_id)` Update or insert EAV metadata.
`void`	`updateReference(Reference reference)` Update an reference.
`void`	`updateReferenceCalibrationMetadata(CalibrationMetadata cm)` Update the calibration metadata for a reference.
`void`	`updateReferencePicture(Picture picture)` Update a picture associated with a reference.
`void`	`updateSpectraMetadata(java.util.ArrayList<java.lang.Integer> ids, java.lang.String field, int id)` Update the metadata fields for a set of spectra
`void`	`updateSpectrumVector(int spectrum_id, float[] vector)` Update the spectral vector of a spectrum
`void`	`updateSpectrumVectors(java.util.HashMap<java.lang.Integer,double[]> updateMap)` Update the spectral vector of a spectrum
`void`	`updateUser(User newUser)` Update the information about a user.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Method Detail
  - connect
```
public void connect()
             throws SPECCHIOWebClientException,
                    SPECCHIOClientException
```
    Connect to the SPECCHIO web application.
    
    Specified by:
    
    connect in interface SPECCHIOClient
    
    Throws:
    
    SPECCHIOWebClientException - could not log in to the server
    
    SPECCHIOClientException
  - close
```
public void close()
           throws SPECCHIOClientException
```
    Close this client
    
    Specified by:
    
    close in interface SPECCHIOClient
    
    Throws:
    
    SPECCHIOClientException - could not close client
  - copySpectrum
```
public int copySpectrum(int spectrum_id,
                        int target_hierarchy_id)
                 throws SPECCHIOClientException
```
    Copy a spectrum to a specified hierarchy.
    
    Specified by:
    
    copySpectrum in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the spectrum_id of the spectrum to copy
    
    target_hierarchy_id - the hierarchy_id where the copy is to be stored
    
    Returns:
    
    new spectrum id
    
    Throws:
    
    SPECCHIOClientException - could not log in
  - copySpectra
```
public java.util.ArrayList<java.lang.Integer> copySpectra(java.util.ArrayList<java.lang.Integer> spectrum_id,
                                                          int target_hierarchy_id,
                                                          int current_hierarchy_id)
                                                   throws SPECCHIOClientException
```
    Copy a spectrum to a specified hierarchy.
    
    Specified by:
    
    copySpectra in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the spectrum_id of the spectrum to copy
    
    target_hierarchy_id - the hierarchy_id where the copy is to be stored
    
    Returns:
    
    new spectrum id
    
    Throws:
    
    SPECCHIOClientException - could not log in
  - copyHierarchy
```
public int copyHierarchy(int hierarchy_id,
                         int target_hierarchy_id,
                         java.lang.String new_name)
                  throws SPECCHIOClientException
```
    Copy a hierarchy to a specified hierarchy with a new name.
    
    Specified by:
    
    copyHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the hierarchy_id of the hierarchy to copy
    
    target_hierarchy_id - the hierarchy_id where the copy is to be stored
    
    new_name - new name for the copied hierarchy
    
    Returns:
    
    new hierarchy_id
    
    Throws:
    
    SPECCHIOClientException - could not log in
  - clearMetaparameterRedundancyList
```
public void clearMetaparameterRedundancyList()
                                      throws SPECCHIOClientException
```
    Clears the known metaparameter list held by the server for this user
    
    Specified by:
    
    clearMetaparameterRedundancyList in interface SPECCHIOClient
    
    Throws:
    
    SPECCHIOClientException
  - createUserAccount
```
public User createUserAccount(User user)
                       throws SPECCHIOClientException
```
    Create a user account.
    
    Specified by:
    
    createUserAccount in interface SPECCHIOClient
    
    Parameters:
    
    user - a user object describing the new user account
    
    Returns:
    
    a new user object containing the complete account details
    
    Throws:
    
    SPECCHIOClientException
  - createUserAccountOnCurrentServer
```
public User createUserAccountOnCurrentServer(User user)
                                      throws SPECCHIOClientException
```
    Create a user account on this specchio server. Only for admin users.
    
    Specified by:
    
    createUserAccountOnCurrentServer in interface SPECCHIOClient
    
    Parameters:
    
    user - a user object describing the new user account
    
    Returns:
    
    a new user object containing the complete account details
    
    Throws:
    
    SPECCHIOClientException
  - createInstrument
```
public void createInstrument(java.lang.String name)
                      throws SPECCHIOWebClientException
```
    Create a new instrument.
    
    Specified by:
    
    createInstrument in interface SPECCHIOClient
    
    Parameters:
    
    name - the name of the new instrument
    
    Throws:
    
    SPECCHIOWebClientException
  - createReference
```
public void createReference(java.lang.String name)
                     throws SPECCHIOWebClientException
```
    Create a new reference.
    
    Specified by:
    
    createReference in interface SPECCHIOClient
    
    Parameters:
    
    name - the name of the new reference
    
    Throws:
    
    SPECCHIOWebClientException
  - dbUpgrade
```
public void dbUpgrade(double version,
                      java.io.FileInputStream fis)
               throws SPECCHIOClientException
```
    Database upgrade
    
    Specified by:
    
    dbUpgrade in interface SPECCHIOClient
    
    Parameters:
    
    version - DB version to be upgraded to
    
    fis - File input stream with SQL upgrade statements
    
    Throws:
    
    SPECCHIOClientException
  - deleteCalibration
```
public void deleteCalibration(int calibration_id)
                       throws SPECCHIOWebClientException
```
    Delete calibration data from the database
    
    Specified by:
    
    deleteCalibration in interface SPECCHIOClient
    
    Parameters:
    
    calibration_id - the calibration identifier
    
    Throws:
    
    SPECCHIOWebClientException
  - deleteInstrument
```
public void deleteInstrument(int instrument_id)
                      throws SPECCHIOWebClientException
```
    Delete an instrument from the database.
    
    Specified by:
    
    deleteInstrument in interface SPECCHIOClient
    
    Parameters:
    
    instrument_id - the instrument identifier
    
    Throws:
    
    SPECCHIOWebClientException
  - deleteInstrumentPicture
```
public void deleteInstrumentPicture(int picture_id)
                             throws SPECCHIOWebClientException
```
    Delete a picture of an instrument from the database.
    
    Specified by:
    
    deleteInstrumentPicture in interface SPECCHIOClient
    
    Parameters:
    
    picture_id - the picture identifier
    
    Throws:
    
    SPECCHIOWebClientException
  - deleteReference
```
public void deleteReference(int reference_id)
                     throws SPECCHIOWebClientException
```
    Delete a reference from the database.
    
    Specified by:
    
    deleteReference in interface SPECCHIOClient
    
    Parameters:
    
    reference_id - the reference identifier
    
    Throws:
    
    SPECCHIOWebClientException
  - deleteReferencePicture
```
public void deleteReferencePicture(int picture_id)
                            throws SPECCHIOWebClientException
```
    Delete a picture of a reference from the database.
    
    Specified by:
    
    deleteReferencePicture in interface SPECCHIOClient
    
    Parameters:
    
    picture_id - the picture identifier
    
    Throws:
    
    SPECCHIOWebClientException
  - deleteTargetReferenceLinks
```
public int deleteTargetReferenceLinks(int eav_id)
                               throws SPECCHIOWebClientException
```
    Delete a target-reference link from the database.
    
    Specified by:
    
    deleteTargetReferenceLinks in interface SPECCHIOClient
    
    Parameters:
    
    eav_id - the eav_id identifier
    
    Returns:
    
    the number of links deleted
    
    Throws:
    
    SPECCHIOWebClientException
  - disconnect
```
public void disconnect()
                throws SPECCHIOWebClientException
```
    Disconnect from the SPECCHIO web application.
    
    Specified by:
    
    disconnect in interface SPECCHIOClient
    
    Throws:
    
    SPECCHIOWebClientException
  - filterSpectrumIdsByHavingAttribute
```
public java.util.ArrayList<java.lang.Integer> filterSpectrumIdsByHavingAttribute(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                                                                 java.lang.String attribute_name)
                                                                          throws SPECCHIOClientException
```
    Get the spectrum identifiers that do have a reference to the specified attribute.
    
    Specified by:
    
    filterSpectrumIdsByHavingAttribute in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - list of ids to filter
    
    attribute_name - attribute name to filter with
    
    Returns:
    
    an array list of spectrum identifiers that match the filter
    
    Throws:
    
    SPECCHIOClientException
  - filterSpectrumIdsByNotHavingAttribute
```
public java.util.ArrayList<java.lang.Integer> filterSpectrumIdsByNotHavingAttribute(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                                                                    java.lang.String attribute_name)
                                                                             throws SPECCHIOClientException
```
    Get the spectrum identifiers that do not have a reference to the specified attribute.
    
    Specified by:
    
    filterSpectrumIdsByNotHavingAttribute in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - list of ids to filter
    
    attribute_name - attribute_name to filter with
    
    Returns:
    
    an array list of spectrum identifiers that match the filter
    
    Throws:
    
    SPECCHIOClientException
  - filterSpectrumIdsByHavingAttributeValue
```
public java.util.ArrayList<java.lang.Integer> filterSpectrumIdsByHavingAttributeValue(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                                                                      java.lang.String attribute_name,
                                                                                      java.lang.Object value)
                                                                               throws SPECCHIOClientException
```
    Get the spectrum identifiers that do reference to the specified attribute of a specified value.
    
    Specified by:
    
    filterSpectrumIdsByHavingAttributeValue in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - list of ids to filter
    
    attribute_name - attribute name to filter with
    
    value - attribute value to match
    
    Returns:
    
    an array list of spectrum identifiers that match the filter
    
    Throws:
    
    SPECCHIOClientException
  - getAttributesForCategory
```
public attribute[] getAttributesForCategory(java.lang.String category)
                                     throws SPECCHIOWebClientException,
                                            SPECCHIOClientException
```
    Get the attributes for a metadata category.
    
    Specified by:
    
    getAttributesForCategory in interface SPECCHIOClient
    
    Parameters:
    
    category - the category name
    
    Returns:
    
    an array of attribute objects
    
    Throws:
    
    SPECCHIOClientException
    
    SPECCHIOWebClientException
  - getAttributes
```
public attribute[] getAttributes()
                          throws SPECCHIOClientException
```
    Get the attributes object containing information on all attributes, units and categories.
    
    Specified by:
    
    getAttributes in interface SPECCHIOClient
    
    Returns:
    
    Attributes
    
    Throws:
    
    SPECCHIOClientException
  - getAttributesIdHash
```
public java.util.Hashtable<java.lang.Integer,attribute> getAttributesIdHash()
                                                                     throws SPECCHIOClientException
```
    Get the attributes hashtable
    
    Specified by:
    
    getAttributesIdHash in interface SPECCHIOClient
    
    Returns:
    
    Attributes stored in hashtable, indexed by attribute_id
    
    Throws:
    
    SPECCHIOClientException
  - getAttributesNameHash
```
public java.util.Hashtable<java.lang.String,attribute> getAttributesNameHash()
                                                                      throws SPECCHIOClientException
```
    Get the attributes hashtable
    
    Specified by:
    
    getAttributesNameHash in interface SPECCHIOClient
    
    Returns:
    
    Attributes stored in hashtable, indexed by attribute name
    
    Throws:
    
    SPECCHIOClientException
  - getAttributeUnits
```
public Units getAttributeUnits(attribute attr)
                        throws SPECCHIOClientException
```
    Get the units for an attribute.
    
    Specified by:
    
    getAttributeUnits in interface SPECCHIOClient
    
    Parameters:
    
    attr - the attribute
    
    Returns:
    
    a units object representing the attribute's units
    
    Throws:
    
    SPECCHIOClientException
  - getCategoriesInfo
```
public java.util.ArrayList<Category> getCategoriesInfo()
                                                throws SPECCHIOClientException
```
    Get the info of all EAV metadata categories.
    
    Specified by:
    
    getCategoriesInfo in interface SPECCHIOClient
    
    Returns:
    
    an array list of category names
    
    Throws:
    
    SPECCHIOClientException
  - getNonNullCategories
```
public java.util.ArrayList<Category> getNonNullCategories(java.util.ArrayList<java.lang.Integer> spectrumIds)
```
    Description copied from interface: SPECCHIOClient
    
    Get the ids and names of all metadata categories used by a set of given spectra.
    
    Specified by:
    
    getNonNullCategories in interface SPECCHIOClient
    
    Parameters:
    
    spectrumIds - list of spectrum ids for which to search used categories
    
    Returns:
    
    an array list of category information
  - getNonNullAttributes
```
public java.util.ArrayList<attribute> getNonNullAttributes(java.util.ArrayList<java.lang.Integer> spectrumIds)
```
    Specified by:
    
    getNonNullAttributes in interface SPECCHIOClient
  - findMatchingSpectra
```
public java.util.ArrayList<java.lang.Integer> findMatchingSpectra(java.util.ArrayList<java.lang.Integer> spectrumIds,
                                                                  java.util.ArrayList<QueryAttribute> queryAttributes)
```
    Specified by:
    
    findMatchingSpectra in interface SPECCHIOClient
  - createFilterCollection
```
public void createFilterCollection(java.util.ArrayList<java.lang.Integer> spectrumIds,
                                   java.util.ArrayList<java.lang.Integer> attributeIds)
```
    Specified by:
    
    createFilterCollection in interface SPECCHIOClient
  - getCampaign
```
public Campaign getCampaign(int campaign_id)
                     throws SPECCHIOClientException
```
    Get a campaign descriptor.
    
    Specified by:
    
    getCampaign in interface SPECCHIOClient
    
    Parameters:
    
    campaign_id - the campaign identifier
    
    Returns:
    
    a new campaign object
    
    Throws:
    
    SPECCHIOClientException
  - getCampaignExportInputStream
```
public java.io.InputStream getCampaignExportInputStream(Campaign c)
                                                 throws SPECCHIOWebClientException
```
    Export a campaign.
    
    Specified by:
    
    getCampaignExportInputStream in interface SPECCHIOClient
    
    Parameters:
    
    c - the campaign to be exported
    
    Returns:
    
    an input stream connected to the exported campaign date
    
    Throws:
    
    SPECCHIOWebClientException
  - getCampaignNode
```
public campaign_node getCampaignNode(int campaign_id,
                                     java.lang.String order_by,
                                     boolean restrict_to_view)
                              throws SPECCHIOWebClientException
```
    Get a campaign node for the spectral data browser.
    
    Specified by:
    
    getCampaignNode in interface SPECCHIOClient
    
    Parameters:
    
    campaign_id - the campaign identifier
    
    order_by - the attribute by which to order the campaign's descendents
    
    restrict_to_view - show user's data only
    
    Returns:
    
    a new campaign node object, or null if the campaign does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getCampaigns
```
public Campaign[] getCampaigns(boolean load_metadata_details)
                        throws SPECCHIOWebClientException
```
    Get all of the campaigns in the database.
    
    Specified by:
    
    getCampaigns in interface SPECCHIOClient
    
    Parameters:
    
    load_metadata_details - defines if additional detailed metadata should be loaded
    
    Returns:
    
    an array of campaign objects describing each campaign in the database
    
    Throws:
    
    SPECCHIOWebClientException
  - getCampaigns
```
public Campaign[] getCampaigns()
                        throws SPECCHIOWebClientException
```
    Get all of the campaigns in the database.
    
    Specified by:
    
    getCampaigns in interface SPECCHIOClient
    
    Returns:
    
    an array of campaign objects describing each campaign in the database
    
    Throws:
    
    SPECCHIOWebClientException
  - getCalibrationIds
```
public java.util.ArrayList<java.lang.Integer> getCalibrationIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                                         throws SPECCHIOWebClientException
```
    Get calibration ids for a list of spectra.
    
    Specified by:
    
    getCalibrationIds in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the spectrum identifiers
    
    Returns:
    
    list of calibration ids, zero where no calibration is defined
    
    Throws:
    
    SPECCHIOWebClientException
  - getCalibratedInstrument
```
public Instrument getCalibratedInstrument(int calibration_id)
                                   throws SPECCHIOClientException
```
    Get a calibrated instrument.
    
    Specified by:
    
    getCalibratedInstrument in interface SPECCHIOClient
    
    Parameters:
    
    calibration_id - the calibration identifier
    
    Returns:
    
    a new Instrument object, or null if the calibrated instrument does not exist
    
    Throws:
    
    SPECCHIOClientException
  - getCalibrationMetadataByCalibrationNumber
```
public CalibrationMetadata[] getCalibrationMetadataByCalibrationNumber(int instrument_id,
                                                                       int calibration_number)
                                                                throws SPECCHIOClientException
```
    Get an array of CalibrationMetadata based on an instrument id and a calibration number (typically an ASD instrument).
    
    Specified by:
    
    getCalibrationMetadataByCalibrationNumber in interface SPECCHIOClient
    
    Parameters:
    
    instrument_id - the instrument_id
    
    calibration_number - the calibration number is given in the Metadata field "Calibration Number"
    
    Returns:
    
    an array of CalibrationMetadata
    
    Throws:
    
    SPECCHIOClientException
  - getCapability
```
public java.lang.String getCapability(java.lang.String capability)
                               throws SPECCHIOClientException
```
    Get the value of a capability.
    
    Specified by:
    
    getCapability in interface SPECCHIOClient
    
    Parameters:
    
    capability - the capability name
    
    Returns:
    
    the value of the capability, or null if the capability is not recognised
    
    Throws:
    
    SPECCHIOClientException
  - getChildrenOfNode
```
public java.util.List<spectral_node_object> getChildrenOfNode(spectral_node_object sn)
                                                       throws SPECCHIOWebClientException
```
    Get the children of a node of the spectral data browser.
    
    Specified by:
    
    getChildrenOfNode in interface SPECCHIOClient
    
    Parameters:
    
    sn - the node
    
    Returns:
    
    a list of the node's children
    
    Throws:
    
    SPECCHIOWebClientException
  - getChildrenOfTaxonomyNode
```
public java.util.List<TaxonomyNodeObject> getChildrenOfTaxonomyNode(TaxonomyNodeObject tn)
                                                             throws SPECCHIOWebClientException
```
    Get the children of a node of a taxonomy.
    
    Specified by:
    
    getChildrenOfTaxonomyNode in interface SPECCHIOClient
    
    Parameters:
    
    tn - the node
    
    Returns:
    
    a list of the node's children
    
    Throws:
    
    SPECCHIOWebClientException
  - getCountries
```
public Country[] getCountries()
                       throws SPECCHIOWebClientException
```
    Get the list of countries known to the server.
    
    Specified by:
    
    getCountries in interface SPECCHIOClient
    
    Returns:
    
    an array of Country objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getDatabaseNode
```
public database_node getDatabaseNode(java.lang.String order_by,
                                     boolean restrict_to_view)
                              throws SPECCHIOWebClientException
```
    Get a database node for the spectral data browser.
    
    Specified by:
    
    getDatabaseNode in interface SPECCHIOClient
    
    Parameters:
    
    order_by - the attribute to order by
    
    restrict_to_view - display the current user's data only
    
    Returns:
    
    a database_node object
    
    Throws:
    
    SPECCHIOWebClientException
  - getDirectHierarchyId
```
public java.lang.Integer getDirectHierarchyId(int spectrum_id)
                                       throws SPECCHIOClientException
```
    Get the direct hierarchy id of a single spectrum
    
    Specified by:
    
    getDirectHierarchyId in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the identifier of the spectrum
    
    Returns:
    
    hierarchy id
    
    Throws:
    
    SPECCHIOClientException
  - getDirectHierarchyIds
```
public java.util.ArrayList<java.lang.Integer> getDirectHierarchyIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                                             throws SPECCHIOClientException
```
    Get hierarchy ids, directly above these spectra
    
    Specified by:
    
    getDirectHierarchyIds in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the identifiers of the desired spectra
    
    Returns:
    
    hierarchy ids
    
    Throws:
    
    SPECCHIOClientException
  - getDistinctValuesOfAttribute
```
public java.util.ArrayList<MetaParameter> getDistinctValuesOfAttribute(int attribute_id)
```
    Get distinct values of an attribute
    
    Specified by:
    
    getDistinctValuesOfAttribute in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - id of the required attribute
    
    Returns:
    
    arraylist of metaparameters
  - getEavMetadataConflicts
```
public ConflictTable getEavMetadataConflicts(int metadata_level,
                                             java.util.ArrayList<java.lang.Integer> ids)
                                      throws SPECCHIOWebClientException
```
    Get a conflicts in the EAV metadata for a set of spectra.
    
    Specified by:
    
    getEavMetadataConflicts in interface SPECCHIOClient
    
    Parameters:
    
    metadata_level - storage level identifier
    
    ids - the primary entity identifiers
    
    Returns:
    
    a ConflictTable object containing all of the conflicts
    
    Throws:
    
    SPECCHIOWebClientException
  - getEAVQueryConditionObject
```
public EAVQueryConditionObject getEAVQueryConditionObject(attribute attr)
```
    Return an EAVQueryConditionObject configured for the supplied attribute.
    
    Specified by:
    
    getEAVQueryConditionObject in interface SPECCHIOClient
    
    Parameters:
    
    attr - attribute object
    
    Returns:
    
    EAVQueryConditionObject
  - getExistingMetaparameterCount
```
public java.lang.Integer getExistingMetaparameterCount(java.lang.Integer attribute_id,
                                                       java.util.ArrayList<java.lang.Integer> ids)
                                                throws SPECCHIOClientException
```
    Get the count of existing metaparameters for the supplied spectrum ids and attribute id
    
    Specified by:
    
    getExistingMetaparameterCount in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - id of the attribute
    
    ids - spectrum ids
    
    Returns:
    
    Integer
    
    Throws:
    
    SPECCHIOClientException
  - getFileFormatId
```
public int getFileFormatId(java.lang.String format)
                    throws SPECCHIOWebClientException
```
    Get the file format identifier for a file format name.
    
    Specified by:
    
    getFileFormatId in interface SPECCHIOClient
    
    Parameters:
    
    format - the file format name
    
    Returns:
    
    the identifier associated with the specified file format, or -1 if file format is not recognised
    
    Throws:
    
    SPECCHIOWebClientException
  - getHierarchy
```
public Hierarchy getHierarchy(java.lang.Integer hierarchy_id)
                       throws SPECCHIOWebClientException
```
    Get the hierarchy object for a given hierarchy_id
    
    Specified by:
    
    getHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the hierarchy_id identifying the required node
    
    Returns:
    
    the hierarchy object, or -1 if the node does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getHierarchyId
```
public int getHierarchyId(Campaign campaign,
                          java.lang.String name,
                          int parent_id)
                   throws SPECCHIOWebClientException
```
    Get the identifier of a hierarchy node.
    
    Specified by:
    
    getHierarchyId in interface SPECCHIOClient
    
    Parameters:
    
    campaign - the campaign in which the node is located
    
    name - the name of the node
    
    parent_id - the parent of the node
    
    Returns:
    
    the identifier of the child of parent_id with the given name, or -1 if the node does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getHierarchyIdsOfSpectra
```
public java.util.ArrayList<java.lang.Integer> getHierarchyIdsOfSpectra(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                                                throws SPECCHIOClientException
```
    Get a list of hierarchy ids, covering all hierarchies above these spectra
    
    Specified by:
    
    getHierarchyIdsOfSpectra in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the identifiers of the desired spectra
    
    Returns:
    
    hierarchy ids
    
    Throws:
    
    SPECCHIOClientException
  - getHierarchyFilePath
```
public java.lang.String getHierarchyFilePath(int hierarchy_id)
                                      throws SPECCHIOClientException
```
    Get the file path of a hierarchy.
    
    Specified by:
    
    getHierarchyFilePath in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the identifier of the hierarchy
    
    Returns:
    
    path as string
    
    Throws:
    
    SPECCHIOClientException - the database could not accessed
  - getHierarchyName
```
public java.lang.String getHierarchyName(int hierarchy_id)
                                  throws SPECCHIOClientException
```
    Get the name of a hierarchy.
    
    Specified by:
    
    getHierarchyName in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the identifier of the hierarchy
    
    Returns:
    
    name name as string
    
    Throws:
    
    SPECCHIOClientException - the database could not accessed
  - getHierarchyParentId
```
public int getHierarchyParentId(int hierarchy_id)
                         throws SPECCHIOClientException
```
    Get the parent_id for a given hierarchy_id
    
    Specified by:
    
    getHierarchyParentId in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the hierarchy_id identifying the required node
    
    Returns:
    
    id of the parent of given hierarchy
    
    Throws:
    
    SPECCHIOClientException
  - getInstitutes
```
public Institute[] getInstitutes()
                          throws SPECCHIOWebClientException
```
    Get all of the institutes in the database.
    
    Specified by:
    
    getInstitutes in interface SPECCHIOClient
    
    Returns:
    
    an array of Institute objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrument
```
public Instrument getInstrument(int instrument_id)
                         throws SPECCHIOWebClientException
```
    Get an instrument.
    
    Specified by:
    
    getInstrument in interface SPECCHIOClient
    
    Parameters:
    
    instrument_id - the instrument identifier
    
    Returns:
    
    a new Instrument object, or null if the instrument does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrument
```
public Instrument getInstrument(Instrument instrument)
                         throws SPECCHIOWebClientException
```
    Get an instrument that matches the passed object or creates a new instrument and returns it
    
    Specified by:
    
    getInstrument in interface SPECCHIOClient
    
    Parameters:
    
    instrument - instance
    
    Returns:
    
    a new Instrument object
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrumentIds
```
public java.util.ArrayList<java.lang.Integer> getInstrumentIds(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                                        throws SPECCHIOWebClientException
```
    Get instrument ids for a list of spectra.
    
    Specified by:
    
    getInstrumentIds in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the spectrum identifiers
    
    Returns:
    
    list of instrument ids, zero where no instrument is defined
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrumentCalibrationMetadata
```
public CalibrationMetadata[] getInstrumentCalibrationMetadata(int instrument_id)
                                                       throws SPECCHIOWebClientException
```
    Get the calibration metadata for an instrument.
    
    Specified by:
    
    getInstrumentCalibrationMetadata in interface SPECCHIOClient
    
    Parameters:
    
    instrument_id - the instrument identifier
    
    Returns:
    
    an array of CalibrationMetadata objects, or null if the instrument does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrumentDescriptors
```
public InstrumentDescriptor[] getInstrumentDescriptors()
                                                throws SPECCHIOWebClientException
```
    Get descriptors for all of the instruments in the database.
    
    Specified by:
    
    getInstrumentDescriptors in interface SPECCHIOClient
    
    Returns:
    
    an array of InstrumentDescriptor objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getInstrumentForSpectralFile
```
public Instrument getInstrumentForSpectralFile(SpectralFile spec_file)
                                        throws SPECCHIOClientException
```
    Get a instrument object for a given spectral file object.
    
    Specified by:
    
    getInstrumentForSpectralFile in interface SPECCHIOClient
    
    Parameters:
    
    spec_file - the spectral file
    
    Returns:
    
    a new Instrument object
    
    Throws:
    
    SPECCHIOClientException
  - getInstrumentPictures
```
public PictureTable getInstrumentPictures(int instrument_id)
                                   throws SPECCHIOWebClientException
```
    Get all of the pictures for an instrument.
    
    Specified by:
    
    getInstrumentPictures in interface SPECCHIOClient
    
    Parameters:
    
    instrument_id - the instrument identifier
    
    Returns:
    
    a PictureTable object containing all of the pictures for this instrument, or null if the instrument doesn't exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getLoggedInUser
```
public User getLoggedInUser()
```
    Get a user object representing the user under which the client is logged in.
    
    Specified by:
    
    getLoggedInUser in interface SPECCHIOClient
    
    Returns:
    
    a reference to a user object, or null if the client is not connected
  - getMetadataCategoriesForApplicationDomain
```
public java.util.ArrayList<java.lang.Integer> getMetadataCategoriesForApplicationDomain(int taxonomy_id)
                                                                                 throws SPECCHIOClientException
```
    Get the metadata categories for application domain
    
    Specified by:
    
    getMetadataCategoriesForApplicationDomain in interface SPECCHIOClient
    
    Parameters:
    
    taxonomy_id - the field name
    
    Returns:
    
    a ArrayList object, or null if the field does not exist
    
    Throws:
    
    SPECCHIOClientException
  - getMetadataCategoriesForApplicationDomains
```
public ApplicationDomainCategories[] getMetadataCategoriesForApplicationDomains()
                                                                         throws SPECCHIOClientException
```
    Get the metadata categories per application domain
    
    Specified by:
    
    getMetadataCategoriesForApplicationDomains in interface SPECCHIOClient
    
    Returns:
    
    a ApplicationDomainCategories object, or null if the information does not exist
    
    Throws:
    
    SPECCHIOClientException
  - getMetadataCategoriesForIdAccess
```
public CategoryTable getMetadataCategoriesForIdAccess(java.lang.String field)
                                               throws SPECCHIOWebClientException,
                                                      SPECCHIOClientException
```
    Get the metadata categories for a metadata field.
    
    Specified by:
    
    getMetadataCategoriesForIdAccess in interface SPECCHIOClient
    
    Parameters:
    
    field - the field name
    
    Returns:
    
    a CategoryTable object, or null if the field does not exist
    
    Throws:
    
    SPECCHIOClientException
    
    SPECCHIOWebClientException
  - getMetadataCategoriesForNameAccess
```
public java.util.Hashtable<java.lang.String,java.lang.Integer> getMetadataCategoriesForNameAccess(java.lang.String field)
                                                                                           throws SPECCHIOClientException
```
    Get the metadata categories for a metadata field, ready for access via name
    
    Specified by:
    
    getMetadataCategoriesForNameAccess in interface SPECCHIOClient
    
    Parameters:
    
    field - the field name
    
    Returns:
    
    a CategoryTable object, or null if the field does not exist
    
    Throws:
    
    SPECCHIOClientException
  - getMetadataConflicts
```
public ConflictTable getMetadataConflicts(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                          java.lang.String[] fields)
                                   throws SPECCHIOWebClientException
```
    Get the metadata conflicts for a set of spectra and set of fields.
    
    Specified by:
    
    getMetadataConflicts in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the spectrum identifiers
    
    fields - the fields to check
    
    Returns:
    
    a ConflictTable object listing the conflicts found
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameter
```
public MetaParameter getMetaparameter(java.lang.Integer id,
                                      java.lang.String attribute_name)
                               throws SPECCHIOWebClientException
```
    Get metaparameter for spectrum id and EAV attribute
    
    Specified by:
    
    getMetaparameter in interface SPECCHIOClient
    
    Parameters:
    
    id - spectrum id
    
    attribute_name - attribute name
    
    Returns:
    
    metaparameter, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameters
```
public java.util.ArrayList<MetaParameter> getMetaparameters(java.util.ArrayList<java.lang.Integer> ids,
                                                            java.lang.String attribute_name)
                                                     throws SPECCHIOWebClientException
```
    Get metaparameters for spectrum ids and EAV attribute
    
    Specified by:
    
    getMetaparameters in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_name - attribute name
    
    Returns:
    
    list of metaparameters, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - calculateSunAngle
```
public void calculateSunAngle(java.util.ArrayList<java.lang.Integer> spectrumIds,
                              SPECCHIOClient client)
                       throws SPECCHIOClientException
```
    Description copied from interface: SPECCHIOClient
    
    Get metaparameters for spectrum ids and EAV attribute
    
    Specified by:
    
    calculateSunAngle in interface SPECCHIOClient
    
    Parameters:
    
    spectrumIds - spectrum ids
    
    Throws:
    
    SPECCHIOClientException
  - getMetaparameters
```
public java.util.ArrayList<MetaParameter> getMetaparameters(java.util.ArrayList<java.lang.Integer> ids,
                                                            java.lang.String attribute_name,
                                                            java.lang.Boolean distinct)
                                                     throws SPECCHIOWebClientException
```
    Get metaparameters for spectrum ids and EAV attribute
    
    Specified by:
    
    getMetaparameters in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_name - attribute name
    
    distinct - defines if distinct values should be returned or repeated values for the given spectrum ids: distinct = false means parameters for all spectra, even if redundant
    
    Returns:
    
    list of metaparameters, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameters
```
public java.util.ArrayList<java.util.ArrayList<MetaParameter>> getMetaparameters(java.util.ArrayList<java.lang.Integer> ids,
                                                                                 java.util.ArrayList<java.lang.Integer> attribute_ids)
                                                                          throws SPECCHIOWebClientException
```
    Get list of metaparameters for spectrum ids and EAV attributes
    
    Specified by:
    
    getMetaparameters in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_ids - list of attribute ids
    
    Returns:
    
    list of list of metaparameters, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameterStatistics
```
public MetaparameterStatistics getMetaparameterStatistics(java.util.ArrayList<java.lang.Integer> ids,
                                                          java.lang.String attribute_name)
                                                   throws SPECCHIOWebClientException
```
    Get metaparameter value statistics for spectrum ids and EAV attribute
    
    Specified by:
    
    getMetaparameterStatistics in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_name - attribute name
    
    Returns:
    
    structure with Metaparameter holding statistic values
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameterValues
```
public MatlabAdaptedArrayList<java.lang.Object> getMetaparameterValues(java.util.ArrayList<java.lang.Integer> ids,
                                                                       java.lang.String attribute_name)
                                                                throws SPECCHIOWebClientException
```
    Get values for spectrum ids and EAV attribute (non-distinct values by default)
    
    Specified by:
    
    getMetaparameterValues in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_name - attribute name
    
    Returns:
    
    list of values, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getMetaparameterValues
```
public MatlabAdaptedArrayList<java.lang.Object> getMetaparameterValues(java.util.ArrayList<java.lang.Integer> ids,
                                                                       java.lang.String attribute_name,
                                                                       java.lang.Boolean distinct)
                                                                throws SPECCHIOWebClientException
```
    Get values for spectrum ids and EAV attribute
    
    Specified by:
    
    getMetaparameterValues in interface SPECCHIOClient
    
    Parameters:
    
    ids - spectrum ids
    
    attribute_name - attribute name
    
    distinct - defines if distinct values should be returned or repeated values for the given spectrum ids
    
    Returns:
    
    list of values, or null if the field does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getMeasurementUnitFromCoding
```
public MeasurementUnit getMeasurementUnitFromCoding(int coding)
                                             throws SPECCHIOWebClientException
```
    Get measurement unit for ASD based coding.
    
    Specified by:
    
    getMeasurementUnitFromCoding in interface SPECCHIOClient
    
    Parameters:
    
    coding - coding based on ASD coding
    
    Returns:
    
    a new MeasurementUnit object, or null if the coding does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getNewestSpectra
```
public java.util.ArrayList<java.lang.Integer> getNewestSpectra(int number_of_spectra)
                                                        throws SPECCHIOWebClientException
```
    Get newest N spectra.
    
    Specified by:
    
    getNewestSpectra in interface SPECCHIOClient
    
    Parameters:
    
    number_of_spectra -
    
    Returns:
    
    list of spectrum ids ordered by data ingestion time
    
    Throws:
    
    SPECCHIOWebClientException
  - getPoliciesForSpace
```
public java.lang.String[] getPoliciesForSpace(Space space)
                                       throws SPECCHIOWebClientException
```
    Get the data usage policies for a space.
    
    Specified by:
    
    getPoliciesForSpace in interface SPECCHIOClient
    
    Parameters:
    
    space - the space
    
    Returns:
    
    an array of Policy objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getQueryObject
```
public Query getQueryObject()
                     throws SPECCHIOClientException
```
    Get an empty query object
    
    Specified by:
    
    getQueryObject in interface SPECCHIOClient
    
    Returns:
    
    a Query Object
    
    Throws:
    
    SPECCHIOClientException
  - getReference
```
public Reference getReference(int reference_id)
                       throws SPECCHIOWebClientException
```
    Get a reference.
    
    Specified by:
    
    getReference in interface SPECCHIOClient
    
    Parameters:
    
    reference_id - the reference identifier
    
    Returns:
    
    a new Reference object, or null if the instrument does not exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getReferenceBrands
```
public ReferenceBrand[] getReferenceBrands()
                                    throws SPECCHIOWebClientException
```
    Get all of the reference brands in the database.
    
    Specified by:
    
    getReferenceBrands in interface SPECCHIOClient
    
    Returns:
    
    an array of ReferenceBrand objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getReferenceCalibrationMetadata
```
public CalibrationMetadata[] getReferenceCalibrationMetadata(int reference_id)
                                                      throws SPECCHIOWebClientException
```
    Get the calibration metadata for a reference.
    
    Specified by:
    
    getReferenceCalibrationMetadata in interface SPECCHIOClient
    
    Parameters:
    
    reference_id - the reference identifier
    
    Returns:
    
    an array of CalibrationMetadata objects, or null if the reference does note exist
    
    Throws:
    
    SPECCHIOWebClientException
  - getReferenceDescriptors
```
public ReferenceDescriptor[] getReferenceDescriptors()
                                              throws SPECCHIOWebClientException
```
    Get descriptors for all of the references in the database.
    
    Specified by:
    
    getReferenceDescriptors in interface SPECCHIOClient
    
    Returns:
    
    an arra of ReferenceDescriptor objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getReferencePictures
```
public PictureTable getReferencePictures(int reference_id)
                                  throws SPECCHIOWebClientException
```
    Get all of the pictures associated with a reference.
    
    Specified by:
    
    getReferencePictures in interface SPECCHIOClient
    
    Parameters:
    
    reference_id - the reference identifier
    
    Returns:
    
    a PictureTable containing all of the pictures
    
    Throws:
    
    SPECCHIOWebClientException
  - getReferenceSpace
```
public ReferenceSpaceStruct getReferenceSpace(java.util.ArrayList<java.lang.Integer> input_ids)
                                       throws SPECCHIOWebClientException
```
    Get a reference space.
    
    Specified by:
    
    getReferenceSpace in interface SPECCHIOClient
    
    Parameters:
    
    input_ids -
    
    Returns:
    
    a ReferenceSpaceStruct object, or null if no space could be found
    
    Throws:
    
    SPECCHIOWebClientException
  - getServerDescriptor
```
public SPECCHIOServerDescriptor getServerDescriptor()
```
    Get a server descriptor that describes the server to which this client is connected.
    
    Specified by:
    
    getServerDescriptor in interface SPECCHIOClient
    
    Returns:
    
    a new server descriptor object
  - getSensors
```
public Sensor[] getSensors()
                    throws SPECCHIOWebClientException
```
    Get all of the sensors in the database.
    
    Specified by:
    
    getSensors in interface SPECCHIOClient
    
    Returns:
    
    an array of Sensor objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getSensorSamplingGeometry
```
public GonioSamplingPoints getSensorSamplingGeometry(SpectralSpace space)
                                              throws SPECCHIOWebClientException
```
    Get sensor sampling geometry
    
    Specified by:
    
    getSensorSamplingGeometry in interface SPECCHIOClient
    
    Parameters:
    
    space - holds spectra ids of which geometry is to retrieved
    
    Returns:
    
    a new GonioSamplingPoints, or null if no geometries were found
    
    Throws:
    
    SPECCHIOWebClientException
  - getSubHierarchyId
```
public int getSubHierarchyId(Campaign campaign,
                             java.lang.String name,
                             int parent_id)
                      throws SPECCHIOClientException
```
    Get the identifier of a sub-hierarchy with a given name, creating the hierarchy if it doesn't exist (deprecated)
    
    Specified by:
    
    getSubHierarchyId in interface SPECCHIOClient
    
    Parameters:
    
    campaign - the campaign into which to insert the hierarchy
    
    parent_id - the identifier of the the parent of the hierarchy
    
    name - the name of the desired hierarchy
    
    Returns:
    
    the identifier of the child of parent_id with the name hierarchy_name
    
    Throws:
    
    SPECCHIOClientException
  - getSubHierarchyId
```
public int getSubHierarchyId(java.lang.String name,
                             int parent_id)
                      throws SPECCHIOClientException
```
    Get the identifier of a sub-hierarchy with a given name, creating the hierarchy if it doesn't exist.
    
    Specified by:
    
    getSubHierarchyId in interface SPECCHIOClient
    
    Parameters:
    
    name - the name of the desired hierarchy
    
    parent_id - the identifier of the the parent of the hierarchy
    
    Returns:
    
    the identifier of the child of parent_id with the name hierarchy_name
    
    Throws:
    
    SPECCHIOClientException
  - getSpaces
```
public Space[] getSpaces(java.util.ArrayList<java.lang.Integer> ids,
                         boolean split_spaces_by_sensor,
                         boolean split_spaces_by_sensor_and_unit,
                         java.lang.String order_by)
                  throws SPECCHIOWebClientException
```
    Get the space objects for a set of spectrum identifiers.
    
    Specified by:
    
    getSpaces in interface SPECCHIOClient
    
    Parameters:
    
    ids - the spectrum identifiers
    
    split_spaces_by_sensor -
    
    split_spaces_by_sensor_and_unit -
    
    order_by - the field to order by
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpaces
```
public Space[] getSpaces(java.util.ArrayList<java.lang.Integer> ids,
                         java.lang.String order_by)
                  throws SPECCHIOWebClientException
```
    Get the space objects for a set of spectrum identifiers. Configured to sort by sensor, unit, instrument and calibration
    
    Specified by:
    
    getSpaces in interface SPECCHIOClient
    
    Parameters:
    
    ids - the spectrum identifiers
    
    order_by - the field to order by
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrum
```
public Spectrum getSpectrum(int spectrum_id,
                            boolean load_metadata)
                     throws SPECCHIOWebClientException
```
    Get a spectrum.
    
    Specified by:
    
    getSpectrum in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the spectrum identifier
    
    load_metadata - load all spectrum metadata?
    
    Returns:
    
    a Spectrum object
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrumCalibrationSpaces
```
public Space[] getSpectrumCalibrationSpaces(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                     throws SPECCHIOWebClientException
```
    Get the calibration spaces for a set of spectra.
    
    Specified by:
    
    getSpectrumCalibrationSpaces in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the spectrum identifiers
    
    Returns:
    
    an array of Space objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrumFactorTable
```
public SpectrumFactorTable getSpectrumFactorTable(java.util.ArrayList<java.lang.Integer> spectrum_ids_1,
                                                  java.util.ArrayList<java.lang.Integer> spectrum_ids_2)
                                           throws SPECCHIOWebClientException
```
    Get the spectrum factor table for a set of spectra.
    
    Specified by:
    
    getSpectrumFactorTable in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids_1 -
    
    spectrum_ids_2 -
    
    Returns:
    
    a SpectrumFactorTable object
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrumCountInDB
```
public int getSpectrumCountInDB()
                         throws SPECCHIOClientException
```
    Get the number of spectra in the database
    
    Specified by:
    
    getSpectrumCountInDB in interface SPECCHIOClient
    
    Returns:
    
    the number of spectra in the database
    
    Throws:
    
    SPECCHIOClientException
  - getSpectrumIdsForNode
```
public java.util.List<java.lang.Integer> getSpectrumIdsForNode(spectral_node_object sn)
                                                        throws SPECCHIOWebClientException
```
    Get the identifiers of all spectra beneath a given node of the spectral data browser
    
    Specified by:
    
    getSpectrumIdsForNode in interface SPECCHIOClient
    
    Parameters:
    
    sn - the node
    
    Returns:
    
    a list of spectrum identifiers
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrumIdsMatchingFullTextSearch
```
public java.util.ArrayList<java.lang.Integer> getSpectrumIdsMatchingFullTextSearch(java.lang.String search_str)
                                                                            throws SPECCHIOClientException
```
    Get the identifiers of all spectra that match a full text search.
    
    Specified by:
    
    getSpectrumIdsMatchingFullTextSearch in interface SPECCHIOClient
    
    Parameters:
    
    search_str - the search string
    
    Returns:
    
    an array list of spectrum identifiers
    
    Throws:
    
    SPECCHIOClientException
  - getSpectrumIdsMatchingFullTextSearchUsingHierarchy
```
public java.util.ArrayList<java.lang.Integer> getSpectrumIdsMatchingFullTextSearchUsingHierarchy(java.lang.String search_str)
                                                                                          throws SPECCHIOClientException
```
    Get the identifiers of all spectra that match a full text search using metadata hierarchy.
    
    Specified by:
    
    getSpectrumIdsMatchingFullTextSearchUsingHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    search_str - the search string
    
    Returns:
    
    an array list of spectrum identifiers
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintySpaces
```
public Space[] getUncertaintySpaces(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                    java.util.ArrayList<java.lang.Integer> uncertainty_set_ids,
                                    java.lang.String order_by)
                             throws SPECCHIOWebClientException
```
    Get the uncertainty spaces for a set of spectra and uncertainty set ids.
    
    Specified by:
    
    getUncertaintySpaces in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - the spectrum identifiers
    
    uncertainty_set_ids -
    
    order_by - the field to order by
    
    Returns:
    
    an array of Space objects
    
    Throws:
    
    SPECCHIOWebClientException
  - getUnprocessedHierarchies
```
public java.util.ArrayList<java.lang.Integer> getUnprocessedHierarchies(java.lang.String campaignId)
                                                                 throws SPECCHIOClientException
```
    Get the identifiers of all spectra that match a full text search.
    
    Specified by:
    
    getUnprocessedHierarchies in interface SPECCHIOClient
    
    Parameters:
    
    campaignId - the search string
    
    Returns:
    
    an array list of spectrum identifiers
    
    Throws:
    
    SPECCHIOClientException
  - getIrradiance
```
public java.util.ArrayList<java.lang.Integer> getIrradiance(java.lang.String campaignId)
                                                     throws SPECCHIOClientException
```
    Description copied from interface: SPECCHIOClient
    
    Get the identifiers of all spectra that match a full text search.
    
    Specified by:
    
    getIrradiance in interface SPECCHIOClient
    
    Parameters:
    
    campaignId - the search string
    
    Returns:
    
    an array list of spectrum identifiers
    
    Throws:
    
    SPECCHIOClientException
  - getSpectrumIdsMatchingQuery
```
public java.util.ArrayList<java.lang.Integer> getSpectrumIdsMatchingQuery(Query query)
                                                                   throws SPECCHIOWebClientException
```
    Get the spectrum identifiers that match a given query.
    
    Specified by:
    
    getSpectrumIdsMatchingQuery in interface SPECCHIOClient
    
    Parameters:
    
    query - the query
    
    Returns:
    
    an array list of spectrum identifiers that match the query
    
    Throws:
    
    SPECCHIOWebClientException
  - getDirectSpectrumIdsOfHierarchy
```
public java.util.ArrayList<java.lang.Integer> getDirectSpectrumIdsOfHierarchy(int hierarchy_id)
                                                                       throws SPECCHIOClientException
```
    Get the identifiers of all spectra directly belonging to a hierarchy
    
    Specified by:
    
    getDirectSpectrumIdsOfHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - the hierarchy_id
    
    Returns:
    
    a list of spectrum identifiers
    
    Throws:
    
    SPECCHIOClientException
  - getSpectrumPictures
```
public PictureTable getSpectrumPictures(int spectrum_id)
                                 throws SPECCHIOWebClientException
```
    Get the pictures associated with a spectrum.
    
    Specified by:
    
    getSpectrumPictures in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the spectrum identifier
    
    Returns:
    
    a PictureTable containing all of the pictures associated with the spectrum
    
    Throws:
    
    SPECCHIOWebClientException
  - getSpectrumQueryCount
```
public int getSpectrumQueryCount(Query query)
                          throws SPECCHIOWebClientException
```
    Get the number of spectra that matach a given query.
    
    Specified by:
    
    getSpectrumQueryCount in interface SPECCHIOClient
    
    Parameters:
    
    query - the query
    
    Returns:
    
    the number of spectra that match the query
    
    Throws:
    
    SPECCHIOWebClientException
  - getTargetReferenceLinks
```
public SpectrumDataLink[] getTargetReferenceLinks(java.util.ArrayList<java.lang.Integer> target_ids,
                                                  java.util.ArrayList<java.lang.Integer> reference_ids)
                                           throws SPECCHIOClientException
```
    Get the spectrum data links that refer to a given set of targets and/or references.
    
    Specified by:
    
    getTargetReferenceLinks in interface SPECCHIOClient
    
    Parameters:
    
    target_ids - the identifiers of the target spectra (null or empty to match all targets)
    
    reference_ids - the identifiers of the reference spectra (null or empty to match all references)
    
    Returns:
    
    an array of SpectrumDataLink objects
    
    Throws:
    
    SPECCHIOClientException
  - getTaxonomyRootNode
```
public TaxonomyNodeObject getTaxonomyRootNode(int attribute_id)
                                       throws SPECCHIOWebClientException
```
    Get the top node for a given taxonomy
    
    Specified by:
    
    getTaxonomyRootNode in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - id of the attribute that defines the taxonomy
    
    Throws:
    
    SPECCHIOWebClientException
  - getTaxonomyNode
```
public TaxonomyNodeObject getTaxonomyNode(int taxonomy_id)
                                   throws SPECCHIOWebClientException
```
    Get the node for a given taxonomy
    
    Specified by:
    
    getTaxonomyNode in interface SPECCHIOClient
    
    Parameters:
    
    taxonomy_id - taxonomy_id that defines the taxonomy
    
    Throws:
    
    SPECCHIOWebClientException
  - getTaxonomyId
```
public int getTaxonomyId(int attribute_id,
                         java.lang.String name)
                  throws SPECCHIOClientException
```
    Get the id for a given taxonomy node in a given taxonomy
    
    Specified by:
    
    getTaxonomyId in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - attribute_id that defines the taxonomy
    
    name - name of the node of which the id is required
    
    Throws:
    
    SPECCHIOClientException
  - getTaxonomyHash
```
public java.util.Hashtable<java.lang.String,java.lang.Integer> getTaxonomyHash(int attribute_id)
                                                                        throws SPECCHIOClientException
```
    Get the taxonomy hash for a given taxonomy
    
    Specified by:
    
    getTaxonomyHash in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - attribute_id that defines the taxonomy
    
    Throws:
    
    SPECCHIOClientException
  - getTaxonomyHash
```
public java.util.Hashtable<java.lang.String,java.lang.Integer> getTaxonomyHash(attribute attribute)
                                                                        throws SPECCHIOClientException
```
    Get the taxonomy hash for a given taxonomy
    
    Specified by:
    
    getTaxonomyHash in interface SPECCHIOClient
    
    Parameters:
    
    attribute - attribute that defines the taxonomy
    
    Throws:
    
    SPECCHIOClientException
  - getTaxonomyIdToNameHash
```
public java.util.Hashtable<java.lang.Integer,java.lang.String> getTaxonomyIdToNameHash(int attribute_id)
                                                                                throws SPECCHIOClientException
```
    Get the ID to name hash for a given taxonomy
    
    Specified by:
    
    getTaxonomyIdToNameHash in interface SPECCHIOClient
    
    Parameters:
    
    attribute_id - attribute_id that defines the taxonomy
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintySet
```
public UncertaintySet getUncertaintySet(int uncertainty_set_id)
                                 throws SPECCHIOClientException
```
    Get uncertainty set
    
    Specified by:
    
    getUncertaintySet in interface SPECCHIOClient
    
    Parameters:
    
    uncertainty_set_id - the uncertainty set id of the desired uncertainty set
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintySetIds
```
public java.util.ArrayList<java.lang.Integer> getUncertaintySetIds(int spectrum_id)
                                                            throws SPECCHIOClientException
```
    Get ids of uncertainty sets that contain a spectrum id
    
    Specified by:
    
    getUncertaintySetIds in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the desired spectrum id
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintySetSpectraLists
```
public java.util.ArrayList<UncertaintySetSpectraList> getUncertaintySetSpectraLists(java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                                                             throws SPECCHIOClientException
```
    Retrieve uncertainty set ids where spectrum ids can be found
    
    Specified by:
    
    getUncertaintySetSpectraLists in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids -
    
    Returns:
    
    an arraylist of UncertaintySetSpectraList
    
    Throws:
    
    SPECCHIOClientException
  - importCampaign
```
public void importCampaign(int user_id,
                           java.io.InputStream is)
                    throws SPECCHIOWebClientException
```
    Import a campaign.
    
    Specified by:
    
    importCampaign in interface SPECCHIOClient
    
    Parameters:
    
    user_id - the identifier of the user to whom the campaign will belong
    
    is - the input stream from which to read the campaign
    
    Throws:
    
    SPECCHIOWebClientException
  - importCampaign
```
public void importCampaign(int user_id,
                           java.lang.String server_filepath)
                    throws SPECCHIOWebClientException
```
    Import a campaign from a file that is on the Glassfish server (used for bigger files to prevent timeouts)
    
    Specified by:
    
    importCampaign in interface SPECCHIOClient
    
    Parameters:
    
    user_id - the identifier of the user to whom the campaign will belong
    
    server_filepath - the server filepath from which to read the campaign
    
    Throws:
    
    SPECCHIOWebClientException
  - getUsers
```
public User[] getUsers()
                throws SPECCHIOWebClientException
```
    Get a list of all of the users in the database.
    
    Specified by:
    
    getUsers in interface SPECCHIOClient
    
    Returns:
    
    an array of User objects
    
    Throws:
    
    SPECCHIOClientException
    
    SPECCHIOWebClientException
  - getUsersWithStatistics
```
public User[] getUsersWithStatistics()
                              throws SPECCHIOWebClientException
```
    Get a list of all of the users in the database with added user statistics (number of loaded spectra, number of campaigns).
    
    Specified by:
    
    getUsersWithStatistics in interface SPECCHIOClient
    
    Returns:
    
    an array of User objects
    
    Throws:
    
    SPECCHIOClientException
    
    SPECCHIOWebClientException
  - insertCampaign
```
public int insertCampaign(Campaign campaign)
                   throws SPECCHIOWebClientException
```
    Insert a new campaign into the database
    
    Specified by:
    
    insertCampaign in interface SPECCHIOClient
    
    Parameters:
    
    campaign - the campaign
    
    Returns:
    
    the identifier of the new campaign
    
    Throws:
    
    SPECCHIOWebClientException
  - insertHierarchy
```
public int insertHierarchy(Campaign campaign,
                           java.lang.String name,
                           int parent_id)
                    throws SPECCHIOWebClientException
```
    Insert a hierarchy node.
    
    Specified by:
    
    insertHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    campaign - the campaign into which to insert the hierarchy
    
    name - the name of the new hierarchy
    
    parent_id - the identifier of the parent of the new hierarchy
    
    Returns:
    
    the identifier of the new hierarchy node
    
    Throws:
    
    SPECCHIOWebClientException
  - insertInstitute
```
public int insertInstitute(Institute institute)
                    throws SPECCHIOClientException
```
    Insert a new institute into the database
    
    Specified by:
    
    insertInstitute in interface SPECCHIOClient
    
    Parameters:
    
    institute - an Institute object describing the new institute
    
    Returns:
    
    the identifier of the new institute
    
    Throws:
    
    SPECCHIOClientException
  - insertInstrumentCalibration
```
public void insertInstrumentCalibration(Calibration c)
                                 throws SPECCHIOWebClientException
```
    Insert calibration for an instrument.
    
    Specified by:
    
    insertInstrumentCalibration in interface SPECCHIOClient
    
    Parameters:
    
    c - the calibration data
    
    Throws:
    
    SPECCHIOWebClientException
  - getAdjacencyMatrix
```
public AdjacencyMatrix getAdjacencyMatrix(int uncertainty_set_id)
                                   throws SPECCHIOWebClientException
```
    Get the adjacency matrix for an uncertainty set
    
    Specified by:
    
    getAdjacencyMatrix in interface SPECCHIOClient
    
    Parameters:
    
    uncertainty_set_id -
    
    Returns:
    
    an integer array of adjacency matrix values
    
    Throws:
    
    SPECCHIOWebClientException
  - getEdgeValue
```
public java.lang.String getEdgeValue(int edge_id)
                              throws SPECCHIOWebClientException
```
    Get edge value for a given edge_id
    
    Specified by:
    
    getEdgeValue in interface SPECCHIOClient
    
    Parameters:
    
    edge_id -
    
    Returns:
    
    an edge value string
    
    Throws:
    
    SPECCHIOWebClientException
  - getUncertaintyInstrumentNode
```
public UncertaintyNode getUncertaintyInstrumentNode(int instrument_node_id)
                                             throws SPECCHIOWebClientException
```
    Get instrument node for a given instrument node id
    
    Specified by:
    
    getUncertaintyInstrumentNode in interface SPECCHIOClient
    
    Parameters:
    
    instrument_node_id - instrument node id
    
    Returns:
    
    an InstrumentNode
    
    Throws:
    
    SPECCHIOWebClientException
  - getUncertaintyNodeComponents
```
public UncertaintyNode[] getUncertaintyNodeComponents(int uncertainty_node_id)
                                               throws SPECCHIOClientException
```
    Retrieve an uncertainty node.
    
    Specified by:
    
    getUncertaintyNodeComponents in interface SPECCHIOClient
    
    Parameters:
    
    uncertainty_node_id -
    
    Returns:
    
    the corresponding uncertainty node
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintyNodeSubSets
```
public UncertaintyNode[] getUncertaintyNodeSubSets(int uncertainty_node_id)
                                            throws SPECCHIOClientException
```
    Retrieve uncertainty node subsets.
    
    Specified by:
    
    getUncertaintyNodeSubSets in interface SPECCHIOClient
    
    Parameters:
    
    uncertainty_node_id -
    
    Returns:
    
    the corresponding uncertainty node components grouped into subsets that make up this combined node
    
    Throws:
    
    SPECCHIOClientException
  - insertUncertaintyInstrumentNode
```
public int insertUncertaintyInstrumentNode(UncertaintyInstrumentNode instrument_node)
                                    throws SPECCHIOClientException
```
    Insert instrument node.
    
    Specified by:
    
    insertUncertaintyInstrumentNode in interface SPECCHIOClient
    
    Parameters:
    
    instrument_node - InstrumentNode object
    
    Returns:
    
    the id of the new instrument node
    
    Throws:
    
    SPECCHIOClientException
  - getUncertaintySpectrumNode
```
public UncertaintyNode getUncertaintySpectrumNode(int spectrum_node_id)
                                           throws SPECCHIOWebClientException
```
    Get spectrum node for a given spectrum node id
    
    Specified by:
    
    getUncertaintySpectrumNode in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_node_id - spectrum node id
    
    Returns:
    
    an InstrumentNode
    
    Throws:
    
    SPECCHIOWebClientException
  - insertInstrumentPicture
```
public void insertInstrumentPicture(Picture picture)
                             throws SPECCHIOWebClientException
```
    Insert a picture of an instrument into the database.
    
    Specified by:
    
    insertInstrumentPicture in interface SPECCHIOClient
    
    Parameters:
    
    picture - the picture
    
    Throws:
    
    SPECCHIOWebClientException
  - insertReferenceCalibration
```
public void insertReferenceCalibration(Calibration c)
                                throws SPECCHIOWebClientException
```
    Insert calibration for a reference into the database.
    
    Specified by:
    
    insertReferenceCalibration in interface SPECCHIOClient
    
    Parameters:
    
    c - the calibration data
    
    Throws:
    
    SPECCHIOWebClientException
  - insertReferencePicture
```
public void insertReferencePicture(Picture picture)
                            throws SPECCHIOWebClientException
```
    Insert a picture associated with a reference into the database.
    
    Specified by:
    
    insertReferencePicture in interface SPECCHIOClient
    
    Parameters:
    
    picture - the picture
    
    Throws:
    
    SPECCHIOWebClientException
  - insertSpectralFile
```
public SpectralFileInsertResult insertSpectralFile(SpectralFile spec_file)
                                            throws SPECCHIOClientException
```
    Insert a spectral file into the database.
    
    Specified by:
    
    insertSpectralFile in interface SPECCHIOClient
    
    Parameters:
    
    spec_file - the file
    
    Returns:
    
    a list of spectrum identifiers that were inserted into the database
    
    Throws:
    
    SPECCHIOClientException
  - insertClosestTargetReferenceLink
```
public int insertClosestTargetReferenceLink(int target_id,
                                            java.util.ArrayList<java.lang.Integer> reference_ids)
                                     throws SPECCHIOClientException
```
    Insert a target-reference link to closest reference on acquisition timeline
    
    Specified by:
    
    insertClosestTargetReferenceLink in interface SPECCHIOClient
    
    Parameters:
    
    target_id - the identifier of the target node
    
    reference_ids - the identifiers of the reference nodes
    
    Returns:
    
    the number of links sucessfully created
    
    Throws:
    
    SPECCHIOClientException
  - insertTargetReferenceLinks
```
public int insertTargetReferenceLinks(int target_id,
                                      java.util.ArrayList<java.lang.Integer> reference_ids)
                               throws SPECCHIOClientException
```
    Insert a target-reference link.
    
    Specified by:
    
    insertTargetReferenceLinks in interface SPECCHIOClient
    
    Parameters:
    
    target_id - the identifier of the target node
    
    reference_ids - the identifiers of the reference nodes
    
    Returns:
    
    the number of links sucessfully created
    
    Throws:
    
    SPECCHIOClientException
  - insertSpectrumSubset
```
public int insertSpectrumSubset(UncertaintySpectrumNode uc_spectrum_node)
                         throws SPECCHIOClientException
```
    Insert a spectrum subset
    
    Specified by:
    
    insertSpectrumSubset in interface SPECCHIOClient
    
    Parameters:
    
    uc_spectrum_node - a spectrum node
    
    Returns:
    
    the id of the created spectrum subset
    
    Throws:
    
    SPECCHIOClientException
  - insertUncertaintyNode
```
public int insertUncertaintyNode(UncertaintySpectrumNode uc_spectrum_node,
                                 int uc_set_id)
                          throws SPECCHIOClientException
```
    Insert an uncertainty node
    
    Specified by:
    
    insertUncertaintyNode in interface SPECCHIOClient
    
    Parameters:
    
    uc_spectrum_node - a uc_node
    
    Returns:
    
    the id of the created node
    
    Throws:
    
    SPECCHIOClientException
  - insertUncertaintyNode
```
public int insertUncertaintyNode(UncertaintyInstrumentNode instrument_node,
                                 int uc_set_id)
                          throws SPECCHIOClientException
```
    Insert instrument node.
    
    Specified by:
    
    insertUncertaintyNode in interface SPECCHIOClient
    
    Parameters:
    
    instrument_node - UncertaintyInstrumentNode object
    
    Returns:
    
    the id of the new instrument node
    
    Throws:
    
    SPECCHIOClientException
  - insertNewUncertaintySet
```
public int insertNewUncertaintySet(UncertaintySet uc_set)
                            throws SPECCHIOClientException
```
    Insert new uncertainty set
    
    Specified by:
    
    insertNewUncertaintySet in interface SPECCHIOClient
    
    Parameters:
    
    uc_set - an uncertainty set with an uncertainty_set_description
    
    Returns:
    
    the id of the created uncertainty set
    
    Throws:
    
    SPECCHIOClientException
  - instrumentCalibrationExists
```
public boolean instrumentCalibrationExists(Calibration cal)
                                    throws SPECCHIOWebClientException
```
    Test for the existence of a calibration in the database.
    
    Specified by:
    
    instrumentCalibrationExists in interface SPECCHIOClient
    
    Parameters:
    
    cal - calibration object to check
    
    Returns:
    
    true if the calibration already exists in the database, false otherwise
    
    Throws:
    
    SPECCHIOWebClientException
  - isLoggedInWithRole
```
public boolean isLoggedInWithRole(java.lang.String roleName)
                           throws SPECCHIOWebClientException
```
    Test whether or not the web client is logged in under a given role.
    
    Specified by:
    
    isLoggedInWithRole in interface SPECCHIOClient
    
    Parameters:
    
    roleName - the role to be tested
    
    Returns:
    
    "true" if the web client is logged in as a user with role roleName, "false" otherwise
    
    Throws:
    
    SPECCHIOWebClientException
  - loadMetaparameter
```
public MetaParameter loadMetaparameter(int metaparameter_id)
                                throws SPECCHIOClientException
```
    Get the meta-parameter of the given metaparameter identifier.
    
    Specified by:
    
    loadMetaparameter in interface SPECCHIOClient
    
    Parameters:
    
    metaparameter_id - the metaparameter identifier for which to retrieve metadata
    
    Returns:
    
    the meta-parameter object corresponding to the desired id
    
    Throws:
    
    SPECCHIOClientException
  - loadSensor
```
public void loadSensor(java.io.InputStream is)
                throws SPECCHIOWebClientException
```
    Load a sensor definition into the database from an input stream.
    
    Specified by:
    
    loadSensor in interface SPECCHIOClient
    
    Parameters:
    
    is - the input stream
    
    Throws:
    
    SPECCHIOWebClientException
  - loadSpace
```
public Space loadSpace(Space space)
                throws SPECCHIOWebClientException
```
    Load a Space object.
    
    Specified by:
    
    loadSpace in interface SPECCHIOClient
    
    Parameters:
    
    space - a partially-filled space object
    
    Returns:
    
    a complete Space object
    
    Throws:
    
    SPECCHIOWebClientException
  - moveHierarchy
```
public boolean moveHierarchy(int source_hierarchy_id,
                             int target_parent_hierarchy)
                      throws SPECCHIOClientException
```
    Move a hierarchy to a new parent hierarchy within the same campaign. If a hierarchy of the same name exists in the target hierarchy then the hierarchies are merged.
    
    Specified by:
    
    moveHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    source_hierarchy_id - hierarchy id of the hierarchy to move
    
    target_parent_hierarchy - hierarchy id of the new parent hierarchy return true if move was done
    
    Throws:
    
    SPECCHIOClientException
  - refreshMetadataCategory
```
public void refreshMetadataCategory(java.lang.String field)
```
    Causes the client to reload data values the specified category upon next request.
    
    Specified by:
    
    refreshMetadataCategory in interface SPECCHIOClient
    
    Parameters:
    
    field - name
  - removeEavMetadata
```
public void removeEavMetadata(MetaParameter mp)
                       throws SPECCHIOWebClientException
```
    Remove an item of EAV metadata.
    
    Specified by:
    
    removeEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to be removed
    
    Throws:
    
    SPECCHIOWebClientException
  - removeEavMetadata
```
public void removeEavMetadata(MetaParameter mp,
                              java.util.ArrayList<java.lang.Integer> spectrum_ids)
                       throws SPECCHIOWebClientException
```
    Remove an item of EAV metadata for a collection of spectra.
    
    Specified by:
    
    removeEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to be removed
    
    spectrum_ids - the spectrum identifiers
    
    Throws:
    
    SPECCHIOWebClientException
  - removeEavMetadata
```
public void removeEavMetadata(attribute attr,
                              java.util.ArrayList<java.lang.Integer> spectrum_ids,
                              int metadata_level)
                       throws SPECCHIOClientException
```
    Remove one or more items of EAV metadata for a collection of spectra for a defined attribute.
    
    Specified by:
    
    removeEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    attr - the attribute to be removed
    
    spectrum_ids - the spectrum identifiers
    
    metadata_level - storage level identifier
    
    Throws:
    
    SPECCHIOClientException
  - renameHierarchy
```
public boolean renameHierarchy(int hierarchy_id,
                               java.lang.String name)
                        throws SPECCHIOClientException
```
    Rename a hierarchy in the database and also on the file system if the path is accessible. The rename on the database will only be applied if a rename on the file system succeeded.
    
    Specified by:
    
    renameHierarchy in interface SPECCHIOClient
    
    Parameters:
    
    hierarchy_id - id of the hierarchy to be renamed
    
    name - new name of the hierarchy
    
    Returns:
    
    true if and only if the renaming succeeded; false otherwise
    
    Throws:
    
    SPECCHIOClientException
  - setProgressReport
```
public void setProgressReport(ProgressReportInterface pr)
```
    Set the progress report interface to which progress made by this client will be reported.
    
    Specified by:
    
    setProgressReport in interface SPECCHIOClient
    
    Parameters:
    
    pr - the progress report; use null to report no progress
  - removeSpectralNode
```
public void removeSpectralNode(spectral_node_object sn)
                        throws SPECCHIOWebClientException
```
    Remove the data corresponding to a node of the spectral data browser.
    
    Specified by:
    
    removeSpectralNode in interface SPECCHIOClient
    
    Parameters:
    
    sn - the node to be removed
    
    Throws:
    
    SPECCHIOWebClientException
  - removeSpectralNodes
```
public void removeSpectralNodes(java.util.ArrayList<spectral_node_object> sns)
                         throws SPECCHIOWebClientException
```
    Remove the data corresponding to a node of the spectral data browser.
    
    Specified by:
    
    removeSpectralNodes in interface SPECCHIOClient
    
    Parameters:
    
    sns - list of nodes to be removed
    
    Throws:
    
    SPECCHIOWebClientException
  - sortByAttributes
```
public AVMatchingListCollection sortByAttributes(java.util.ArrayList<java.lang.Integer> spectrum_ids,
                                                 java.lang.String... attribute_names)
                                          throws SPECCHIOClientException
```
    Sort spectra by the values of the specified attributes
    
    Specified by:
    
    sortByAttributes in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_ids - list of ids to sort
    
    attribute_names - attribute names to sort by
    
    Returns:
    
    a AVMatchingListCollection object (Attention: order of spectrum ids is not guaranteed!)
    
    Throws:
    
    SPECCHIOClientException
  - spectralFileExists
```
public boolean spectralFileExists(SpectralFile spec_file)
                           throws SPECCHIOWebClientException
```
    Test for the existence of a spectral file in the database.
    
    Specified by:
    
    spectralFileExists in interface SPECCHIOClient
    
    Parameters:
    
    spec_file - spectral file object to check
    
    Returns:
    
    true if the file already exists in the database, false otherwise
    
    Throws:
    
    SPECCHIOWebClientException
  - spectralFilesExist
```
public boolean[] spectralFilesExist(SpectralFiles spec_files)
                             throws SPECCHIOClientException
```
    Test for the existence of a spectral files in the database.
    
    Specified by:
    
    spectralFilesExist in interface SPECCHIOClient
    
    Parameters:
    
    spec_files - container with arraylist of spectral files to check
    
    Returns:
    
    array of boolean values indicating existence
    
    Throws:
    
    SPECCHIOClientException
  - submitRDACollection
```
public java.lang.String submitRDACollection(RDACollectionDescriptor collection_d)
                                     throws SPECCHIOWebClientException
```
    Submit a collection to Research Data Australia.
    
    Specified by:
    
    submitRDACollection in interface SPECCHIOClient
    
    Parameters:
    
    collection_d - the collection descriptor
    
    Returns:
    
    the collection identifier of the new string, or an empty string if publication failed
    
    Throws:
    
    SPECCHIOClientException - could not contact the server
    
    SPECCHIOWebClientException
  - updateCampaign
```
public void updateCampaign(Campaign campaign)
                    throws SPECCHIOClientException
```
    Update the information about a campaign
    
    Specified by:
    
    updateCampaign in interface SPECCHIOClient
    
    Parameters:
    
    campaign - the new campaign data
    
    Throws:
    
    SPECCHIOClientException
  - updateEavMetadata
```
public int updateEavMetadata(MetaParameter mp,
                             java.util.ArrayList<java.lang.Integer> spectrum_ids)
                      throws SPECCHIOWebClientException
```
    Update EAV metadata.
    
    Specified by:
    
    updateEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to update
    
    spectrum_ids - the identifiers for which to update the parameter
    
    Returns:
    
    the identifier of the inserted metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateEavMetadata
```
public int updateEavMetadata(MetaParameter mp,
                             java.util.ArrayList<java.lang.Integer> spectrum_ids,
                             MetaParameter mp_old)
                      throws SPECCHIOWebClientException
```
    Update EAV metadata.
    
    Specified by:
    
    updateEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to update
    
    spectrum_ids - the identifiers for which to update the parameter
    
    mp_old - the old meta-parameter
    
    Returns:
    
    the identifier of the inserted metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateEavMetadataAnnotation
```
public int updateEavMetadataAnnotation(MetaParameter mp,
                                       java.util.ArrayList<java.lang.Integer> spectrum_ids)
                                throws SPECCHIOWebClientException
```
    Update EAV metadata annotation.
    
    Specified by:
    
    updateEavMetadataAnnotation in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to update
    
    spectrum_ids - the identifiers for which to update the parameter
    
    Returns:
    
    the identifier of the inserted metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateOrInsertEavMetadata
```
public int updateOrInsertEavMetadata(MetaParameter mp,
                                     java.util.ArrayList<java.lang.Integer> spectrum_ids)
                              throws SPECCHIOWebClientException
```
    Update or insert EAV metadata. Will automatically update existing entries or insert a new metaparameter if not existing.
    
    Specified by:
    
    updateOrInsertEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to update or insert
    
    spectrum_ids - the identifiers for which to update or insert the parameter
    
    Returns:
    
    the identifier of the inserted or updated metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateOrInsertEavMetadata
```
public int updateOrInsertEavMetadata(MetaParameter mp,
                                     int spectrum_id)
                              throws SPECCHIOWebClientException
```
    Update or insert EAV metadata. Will automatically update existing entries or insert a new metaparameter if not existing.
    
    Specified by:
    
    updateOrInsertEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    mp - the meta-parameter to update or insert
    
    spectrum_id - the identifiers for which to update or insert the parameter
    
    Returns:
    
    the identifier of the inserted or updated metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateOrInsertEavMetadata
```
public int updateOrInsertEavMetadata(java.util.ArrayList<Metadata> md,
                                     java.util.ArrayList<java.lang.Integer> ids,
                                     int campaignId)
                              throws SPECCHIOWebClientException
```
    Update or insert EAV metadata. Will automatically update existing entries or insert a new metaparameter if not existing.
    
    Specified by:
    
    updateOrInsertEavMetadata in interface SPECCHIOClient
    
    Parameters:
    
    md - the meta-parameter to update or insert
    
    Returns:
    
    the identifier of the inserted or updated metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateInstrument
```
public void updateInstrument(Instrument instrument)
                      throws SPECCHIOWebClientException
```
    Update an instrument.
    
    Specified by:
    
    updateInstrument in interface SPECCHIOClient
    
    Parameters:
    
    instrument - the instrument
    
    Throws:
    
    SPECCHIOWebClientException
  - updateInstrumentCalibrationMetadata
```
public void updateInstrumentCalibrationMetadata(CalibrationMetadata cm)
                                         throws SPECCHIOWebClientException
```
    Update the calibration metadata for an instrument.
    
    Specified by:
    
    updateInstrumentCalibrationMetadata in interface SPECCHIOClient
    
    Parameters:
    
    cm - the calibration metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateInstrumentPicture
```
public void updateInstrumentPicture(Picture picture)
                             throws SPECCHIOClientException
```
    Update a picture associated with an instrument.
    
    Specified by:
    
    updateInstrumentPicture in interface SPECCHIOClient
    
    Parameters:
    
    picture - the picture
    
    Throws:
    
    SPECCHIOClientException
  - updateReference
```
public void updateReference(Reference reference)
                     throws SPECCHIOWebClientException
```
    Update an reference.
    
    Specified by:
    
    updateReference in interface SPECCHIOClient
    
    Parameters:
    
    reference - the reference
    
    Throws:
    
    SPECCHIOWebClientException
  - updateReferenceCalibrationMetadata
```
public void updateReferenceCalibrationMetadata(CalibrationMetadata cm)
                                        throws SPECCHIOWebClientException
```
    Update the calibration metadata for a reference.
    
    Specified by:
    
    updateReferenceCalibrationMetadata in interface SPECCHIOClient
    
    Parameters:
    
    cm - the calibration metadata
    
    Throws:
    
    SPECCHIOWebClientException
  - updateReferencePicture
```
public void updateReferencePicture(Picture picture)
                            throws SPECCHIOClientException
```
    Update a picture associated with a reference.
    
    Specified by:
    
    updateReferencePicture in interface SPECCHIOClient
    
    Parameters:
    
    picture - the picture
    
    Throws:
    
    SPECCHIOClientException
  - updateSpectraMetadata
```
public void updateSpectraMetadata(java.util.ArrayList<java.lang.Integer> ids,
                                  java.lang.String field,
                                  int id)
                           throws SPECCHIOWebClientException
```
    Update the metadata fields for a set of spectra
    
    Specified by:
    
    updateSpectraMetadata in interface SPECCHIOClient
    
    Parameters:
    
    ids - the spectrum identifiers
    
    field - the name of the field to be updated
    
    id -
    
    Throws:
    
    SPECCHIOWebClientException
  - updateSpectrumVector
```
public void updateSpectrumVector(int spectrum_id,
                                 float[] vector)
                          throws SPECCHIOClientException
```
    Update the spectral vector of a spectrum
    
    Specified by:
    
    updateSpectrumVector in interface SPECCHIOClient
    
    Parameters:
    
    spectrum_id - the spectrum identifier
    
    vector - new spectral data
    
    Throws:
    
    SPECCHIOClientException
  - updateSpectrumVectors
```
public void updateSpectrumVectors(java.util.HashMap<java.lang.Integer,double[]> updateMap)
                           throws SPECCHIOClientException
```
    Update the spectral vector of a spectrum
    
    Specified by:
    
    updateSpectrumVectors in interface SPECCHIOClient
    
    Parameters:
    
    updateMap - a map containing the spectrum_id as key and the vector as value
    
    Throws:
    
    SPECCHIOClientException
  - updateUser
```
public void updateUser(User newUser)
                throws SPECCHIOClientException
```
    Update the information about a user.
    
    Specified by:
    
    updateUser in interface SPECCHIOClient
    
    Parameters:
    
    newUser - the user data
    
    Throws:
    
    SPECCHIOClientException

Class SPECCHIOWebClient

Method Summary

Methods inherited from class java.lang.Object

Method Detail

connect

close

copySpectrum

copySpectra

copyHierarchy

clearMetaparameterRedundancyList

createUserAccount

createUserAccountOnCurrentServer

createInstrument

createReference

dbUpgrade

deleteCalibration

deleteInstrument

deleteInstrumentPicture

deleteReference

deleteReferencePicture

deleteTargetReferenceLinks

disconnect

filterSpectrumIdsByHavingAttribute

filterSpectrumIdsByNotHavingAttribute

filterSpectrumIdsByHavingAttributeValue

getAttributesForCategory

getAttributes

getAttributesIdHash

getAttributesNameHash

getAttributeUnits

getCategoriesInfo

getNonNullCategories

getNonNullAttributes

findMatchingSpectra

createFilterCollection

getCampaign

getCampaignExportInputStream

getCampaignNode

getCampaigns

getCampaigns

getCalibrationIds

getCalibratedInstrument

getCalibrationMetadataByCalibrationNumber

getCapability

getChildrenOfNode

getChildrenOfTaxonomyNode

getCountries

getDatabaseNode

getDirectHierarchyId

getDirectHierarchyIds

getDistinctValuesOfAttribute

getEavMetadataConflicts

getEAVQueryConditionObject

getExistingMetaparameterCount

getFileFormatId

getHierarchy

getHierarchyId

getHierarchyIdsOfSpectra

getHierarchyFilePath

getHierarchyName

getHierarchyParentId

getInstitutes

getInstrument

getInstrument

getInstrumentIds

getInstrumentCalibrationMetadata

getInstrumentDescriptors

getInstrumentForSpectralFile

getInstrumentPictures

getLoggedInUser

getMetadataCategoriesForApplicationDomain

getMetadataCategoriesForApplicationDomains

getMetadataCategoriesForIdAccess

getMetadataCategoriesForNameAccess

getMetadataConflicts

getMetaparameter

getMetaparameters

calculateSunAngle

getMetaparameters

getMetaparameters